Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4272 ATGGCTAGCTCAAATGATGATTCATTTATTAATTCAGACGATGGTAGAGATCTTGATAATAATTCTGATAGTAATTGTGACGAAAGTGGTAGTGAAGGAGACAATGAAGCGGACAATGAGCAACCAGTCTTATATACAACACATGTCGGTCACAAAAAGATAGTCGATCTAACGGTCGATGATATACTTGGTCTAAAGTTCAGCCGACAAGAGGAAGCTTATAAATTTTATTCTGCATATGCAAAACTGCATGGGTTTGTTGTGAGAAAAGACATTCGAAGGCGAGATGAAAATGGTGACTTTATTGTTCAGCAGTATGTATGTAACAAAGAGGGATTGAGGAATAAAAAGCATTTGATGAGGGTGGATAGGAAAATGGATCATAGACCACTCACTCGTACGGGCTGTCATGCTAAGCTACGGGTACGCTTTGATTACAAGATATCTTGTTGGAAAGTGGTTTCTTTTAAGGAGGGTCATAACCATGAACTATACCCGGCAAGTGCAGTTCCTTTAATCCCTGCTTACCGTGCGATCAGTGACGCTGATAAAGCTCAGGTGGATAGCTTGAATTCACAAGGTGTCAAAACTTGTCATATTATGGGTTACTTGTTGGCACAGAAAGGGGGATATGCAGAGATTTTCAGAGAAGTCAAATTTGAGATTGAAGAGGTAGGTGCATTAATGATCATGGAGCGGATAGAAAATGGAGACAGTGTAATGTTTAAGATGAGTAAATTGTTTCAACCCAATAGGATTATTGGTGTTGTTTATGATACTGTGAATTCTTCATTCTCATGTGACTGTCGTCTATTTCAGTCCCGTGGCATTCCATGCTCTCATGTTTTTTGTGCCATGAAACGTGAGCACATGAAATCAATTCCTAGCAGTCTTATTTGCAAACGGTGGACAAAATCTGTCAAGAGTGAGTTCATCTCATCAGATCAATTAGATGAAATGGATCCTGATGTAACCAAAATTACCCGCCGTGGGGCTGCAGCTGCTGCATGTAATAGGCTTTGTGAGATTGCATCAGAAAATGGTAAGTACTTCGATGAAATCAGAGATGAAATCTTAAAGTTGACTTCTAAGTATGACAACAAAAAGGGGTCAAGTAGAACTCAAGGTGATAATTTTAATGATATTCGTGATCCCACTACGGTACCGACAAAAGGCGGCCGTCCTTCAAAGAAGCGGTACAGTAGGACGAGAAGAAGATGTACAAATTGTAGAAAGACTGGACATACATTGAGGACATGTCCCAAGCGCATTGGTACAAAAGATGAGCATATTGCGCATGATGCATCATCACCTCATGAGGATAATGAGATGAGAAGACAAGATAATGAGGACAACACAACATTTAATGATGACAATGTCCAGCACAATGATCACAGTACCCAATATTCAAACTATGCTGAAAATGATAAAGAGGGAACAACACTCAATGAATGCAATATCAAACACAAGGACACAGAGCCGAGTAGTAAGAAAGGAAAAGAAAGAAAGGAAAAGAAAGTTAAACGTTCCACACAAAATTCAATCAATGACTCTGGAAAGCAACCCACTTTGTCTGCTCAGAGACCGCATCTAGAAGCTTATAAAGTTCAACAAACTGGTCTCACAACCCATCATACTGGAAAACAACCTATTTCTTCAGCTCAAAAACCGCATTCGGAAACTCATAAAGTCCAACACACTGGTCACACAATCCATCATATTGTAAGTGGTATATGA 1737 0.3949 MASSNDDSFINSDDGRDLDNNSDSNCDESGSEGDNEADNEQPVLYTTHVGHKKIVDLTVDDILGLKFSRQEEAYKFYSAYAKLHGFVVRKDIRRRDENGDFIVQQYVCNKEGLRNKKHLMRVDRKMDHRPLTRTGCHAKLRVRFDYKISCWKVVSFKEGHNHELYPASAVPLIPAYRAISDADKAQVDSLNSQGVKTCHIMGYLLAQKGGYAEIFREVKFEIEEVGALMIMERIENGDSVMFKMSKLFQPNRIIGVVYDTVNSSFSCDCRLFQSRGIPCSHVFCAMKREHMKSIPSSLICKRWTKSVKSEFISSDQLDEMDPDVTKITRRGAAAAACNRLCEIASENGKYFDEIRDEILKLTSKYDNKKGSSRTQGDNFNDIRDPTTVPTKGGRPSKKRYSRTRRRCTNCRKTGHTLRTCPKRIGTKDEHIAHDASSPHEDNEMRRQDNEDNTTFNDDNVQHNDHSTQYSNYAENDKEGTTLNECNIKHKDTEPSSKKGKERKEKKVKRSTQNSINDSGKQPTLSAQRPHLEAYKVQQTGLTTHHTGKQPISSAQKPHSETHKVQHTGHTIHHIVSGI* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4272 578 MobiDBLite consensus disorder prediction 481 511 - -
Lja3g4272 578 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 178 IPR031052 GO:0006355
Lja3g4272 578 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 213 331 IPR031052 GO:0006355
Lja3g4272 578 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 213 331 - -
Lja3g4272 578 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Lja3g4272 578 SUPERFAMILY Retrovirus zinc finger-like domains 392 430 IPR036875 GO:0003676|GO:0008270
Lja3g4272 578 SMART 26again6 265 292 IPR006564 GO:0008270
Lja3g4272 578 MobiDBLite consensus disorder prediction 541 569 - -
Lja3g4272 578 ProSiteProfiles Zinc finger CCHC-type profile. 405 422 IPR001878 GO:0003676|GO:0008270
Lja3g4272 578 MobiDBLite consensus disorder prediction 395 418 - -
Lja3g4272 578 MobiDBLite consensus disorder prediction 421 458 - -
Lja3g4272 578 MobiDBLite consensus disorder prediction 541 558 - -
Lja3g4272 578 ProSiteProfiles Zinc finger SWIM-type profile. 252 290 IPR007527 GO:0008270
Lja3g4272 578 MobiDBLite consensus disorder prediction 1 39 - -
Lja3g4272 578 MobiDBLite consensus disorder prediction 459 480 - -
Lja3g4272 578 MobiDBLite consensus disorder prediction 367 528 - -
Lja3g4272 578 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 46 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4272 Lja-Chr3 82638616 82642110 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g4272 FAR1 2e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4272 - - ccaj:109794460 228.024