Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4271 ATGGCTAGCTCAGATGATGATTCATTTATTAATTCAGACGATGGTAGAGATCTTGATAATAATTCTGATAGTAATTGTGACGAAAGTGGTAGTGAAGGAGACAATGAAGCGGACAATGAGCAACCAGTCTTATATACAACACATGTCGGTCACAAAAAGATAGTCGATCTAACGGTCGATGATATACTTGGTCTAAAGTTCAGCCGACAAGAGGAAGCTTATAAATTTTATTCTGCATATGCAAAACTGCATGGGTTTGTTGTGAGAAAAGACATTCGAAGGCGAGATGAAAATGGTGACTTTATTGTTCAGCAGTATGTATGTAACAAAGAGGGATTGAGGAATAAAAAGCATTTGATGAGGGTGGATAGGAAAATGGATCATAGACCACTCACTCGTACGGGCTGTCATGCTAAGCTACGGGTACGCTTTGATTACAAGATATCTTGTTGGAAAGTGGTTTCTTTTAAGGAGGGTCATAACCATGAACTATACCCGGCAAGTGCAGTTCCTTTAATCCCTGCTTACCGTGCGATCAGTGACGCTGATAAAGCTCAGGTGGATAGCTTGAATTCACAAGGTGTCAAAACTTGTCATATTATGGCATTGAGAGGATATAGACACAACGAGCTTGTTGCTGATTTTAATTCTCTTTTTACTGAACCGGTTATGACCACTTCTCTCCACATGTACGAGCGGGAGGCTTCAAAAATTTTCACATTAGAGATTTTCAGAGAAGTCAAATTTGAGATTGAAGAGGTAGGTGCATTAATGATCATGGAGCGGATAGAAAATGGAGACAGTGTAATGTTTAAGATGAGTAAATTGTTTCAACCCAATAGGATTATTGGTGTTGTTTATGATACTGTGAATTCTTCATTCTCATGTGACTGTCGTCTATTTCAGTCCCGTGGCATTCCATGCTCTCATGTTTTTTGTGCCATGAAACGTGAGCACATGAAATCAATTCCTAGCAGTCTTATTTGCAAACGGTGGACAAAATCTGTCAAGAGTGAGTTCATCTCATCAGATCAATTAGATGAAATGGATCCTGATGTAACCAAAATTACCCGCCGTGGGGCTGCAGCTGCTGCATGTAATAGGCTTTGTGAGATTGCATCAGAAAATGGTAAGTACTTCGATGAAATCAGAGATGAAATCTTAAAGTTGACTTCTAAGTATGACAACAAAAAGGGGTCAAGTAGAACTCAAGGTGATAATTTTAATGATATTCGTGATCCCACTACGGTACCGACAAAAGGCGGCCGTCCTTCAAAGAAGCGGTACAGTAGGACGAGAAGAAGATGTACAAATTGTAGAAAGACTGGACATACATTGAGGACATGTCCCAAGCGCATTGGTACAAAAGATGAGCATATTGCGCATGATGCATCATCACCTCATGAGGATAATGAGATGAGAAGACAAGTACAAAATATAATTTTCATACTTTTATGA 1458 0.3937 MASSDDDSFINSDDGRDLDNNSDSNCDESGSEGDNEADNEQPVLYTTHVGHKKIVDLTVDDILGLKFSRQEEAYKFYSAYAKLHGFVVRKDIRRRDENGDFIVQQYVCNKEGLRNKKHLMRVDRKMDHRPLTRTGCHAKLRVRFDYKISCWKVVSFKEGHNHELYPASAVPLIPAYRAISDADKAQVDSLNSQGVKTCHIMALRGYRHNELVADFNSLFTEPVMTTSLHMYEREASKIFTLEIFREVKFEIEEVGALMIMERIENGDSVMFKMSKLFQPNRIIGVVYDTVNSSFSCDCRLFQSRGIPCSHVFCAMKREHMKSIPSSLICKRWTKSVKSEFISSDQLDEMDPDVTKITRRGAAAAACNRLCEIASENGKYFDEIRDEILKLTSKYDNKKGSSRTQGDNFNDIRDPTTVPTKGGRPSKKRYSRTRRRCTNCRKTGHTLRTCPKRIGTKDEHIAHDASSPHEDNEMRRQVQNIIFILL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4271 485 SMART 26again6 294 321 IPR006564 GO:0008270
Lja3g4271 485 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 38 177 - -
Lja3g4271 485 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 203 360 - -
Lja3g4271 485 MobiDBLite consensus disorder prediction 396 433 - -
Lja3g4271 485 MobiDBLite consensus disorder prediction 9 23 - -
Lja3g4271 485 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Lja3g4271 485 SUPERFAMILY Retrovirus zinc finger-like domains 421 459 IPR036875 GO:0003676|GO:0008270
Lja3g4271 485 ProSiteProfiles Zinc finger SWIM-type profile. 281 319 IPR007527 GO:0008270
Lja3g4271 485 ProSiteProfiles Zinc finger CCHC-type profile. 434 451 IPR001878 GO:0003676|GO:0008270
Lja3g4271 485 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 177 IPR031052 GO:0006355
Lja3g4271 485 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 203 360 IPR031052 GO:0006355
Lja3g4271 485 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4271 Lja-Chr3 82633179 82639258 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g4271 FAR1 1.5e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4271 - - ccaj:109806300 251.136