Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4266 ATGGAAGAAGAACTAGGTCAAAACAATTCAGTTCCTCCTTCAGGCCCCATTGATAAGTCCAAGATTCTGGATATTAAGCCTCTGAGGAGCTTGATACCTGTTTATCCAATGTCTCCTCAAGCTTCACAGTCAGGCCAGTATCCTCCTGGGTTTTCTTCATTTTTCCCTTTTGGTCCTACTGCTCATCCAACTACACCCTCTGGGTTCGCAACGACGCCGGGTGGTGCCATGCCAGCTCCAATTCGAGCATTTAGGAGGCCAATAGGAGCAGAAGACATTCCTCCAACAATGGAGGGGTTGAATGATCTTGACACTTCTGGTAAGAAAAAAAAAGCAGTAGGACGCCGGGGTCGCCCCAGATCATCTGAGAAACAGAATAAGAAAGTTAAAGAAGGGCCAGATGTTTATTCTTCAAGTGATCTAGTTGGTATAACCTCCGAGCAAAGGGGAGATGGTAGCCCTGAAGTGGTTAATCTTGTACTCACGACATTTGATGCGCTTCGAAGACGGCTCTCCCAGCTTGAAGATGCCAAGGAGTTGAGCACTGGTTCAATCAAGCGCCCAGATTTGAAAGCTTGCAAGATTTTGATGACCAGAGGAATCCGAACTAACATGAGGAAGAGAATCGGAACAGCTCCTGGGGTTGAGATTGGGGATATTTTCTTTTTCCGAATGGAATTATGTCTTGTGGGTTTGCATGCTCCCTCCATGGGTGGAATTGATGCCTTGAATTTGGGCGGGGAGTTTGAGGAAGAAACTGTGGCTACAAGTATTGTTTCGTCAGGAGAATACGACGATGAGGCAGAGGACAGTGATGTTATAATTTTTACTGGTCAGGGTGGGAACTTCAACAGTAAAGATAAGGAAGTGACAGATCAGAAACTTCAAAGGGGTAATCTTGCTTTGGAAAGAAGTTCACGACAACTAAATGAAGTGAGAGTCATCCGGGGCATGAGAGATGGTGTGAATCCAAATGCGAAAATCTACATTTATGATGGCCTGTATAAAATCCAAGATTCATGGGTAGAAAGGGCGAAAAGCGGTGGCGGTGTATTTAAGTATAAGTTGGTAAGAGTGCCTGGACAAGCTAGTGCGTTTGCTGTTTGGAAATCGGTTCAGAAGTGGAAGTCCGGAGCCCCTTCGAGGAACGGACTTATTCTTGCCGATCTCTCCTCAGGAGCTGAGAAAATTCCTGTATCACTTGTCAATGATGTTGATAGCACGAAGGCGCCTGGCTATTTCACTTATTTCCATTCTCTTAGGCATCCAAAATCGTTCACCTTGATGCAGCCTTCACATGGGTGCAACTGTACTAAATGTGTCCCTGGTGATTTGAACTGCTCTTGTATTAGGAGAAATGAAGGGGATTTTCCATATACCAGCAACAGCGTTCTGGTGAGTCGGAAACCATTAGTTCATGAATGTGGCCCGACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCTCAAACTGGATTAAAGCACCACATGGAAGTGTTCAAAACAAAGGATAGTGGGTGGGGTCTTCGGTCACTGGATCCTATTCGCGCTGGTAGTTTTATTTGCGAGTACGCAGGAGAAGTCTTGGATAGAACCAGGATAAGTCAGCTTATGAAGGAAGGAGATAGTGATGAGTATGTTTTTGATACGACCCGTGTTTATGATTCATTCAAGTGGAATTATGAACCGAGGTTACTGGACGAAGTGAGCACAAATGACTCTAACGAAGATTATGCTATACCATATCCTCTAATTATAAGTGCCAAGAATGTCGGGAACGTAGCTCGATTCATGAATCATAGTTGCTCTCCAAATGTGTTCTGGCAGCCTGTCATGTATGAAGAAAATAACCAATCCTTCCTCCATATTGCCTTTTTTGCACGCAGACACATCCCCCCAATGATGGAGTTAACATATGATTATGGATCTGCCCGGTCTGATCATGCTGAGGGTAGCAATGCACACAAGGGGAGAAAGAAGTGCTTATGTGGATCATCGAACTGCCGCGGTTCTTTTGGTTAA 2025 0.4469 MEEELGQNNSVPPSGPIDKSKILDIKPLRSLIPVYPMSPQASQSGQYPPGFSSFFPFGPTAHPTTPSGFATTPGGAMPAPIRAFRRPIGAEDIPPTMEGLNDLDTSGKKKKAVGRRGRPRSSEKQNKKVKEGPDVYSSSDLVGITSEQRGDGSPEVVNLVLTTFDALRRRLSQLEDAKELSTGSIKRPDLKACKILMTRGIRTNMRKRIGTAPGVEIGDIFFFRMELCLVGLHAPSMGGIDALNLGGEFEEETVATSIVSSGEYDDEAEDSDVIIFTGQGGNFNSKDKEVTDQKLQRGNLALERSSRQLNEVRVIRGMRDGVNPNAKIYIYDGLYKIQDSWVERAKSGGGVFKYKLVRVPGQASAFAVWKSVQKWKSGAPSRNGLILADLSSGAEKIPVSLVNDVDSTKAPGYFTYFHSLRHPKSFTLMQPSHGCNCTKCVPGDLNCSCIRRNEGDFPYTSNSVLVSRKPLVHECGPTCQCFPNCKNRVSQTGLKHHMEVFKTKDSGWGLRSLDPIRAGSFICEYAGEVLDRTRISQLMKEGDSDEYVFDTTRVYDSFKWNYEPRLLDEVSTNDSNEDYAIPYPLIISAKNVGNVARFMNHSCSPNVFWQPVMYEENNQSFLHIAFFARRHIPPMMELTYDYGSARSDHAEGSNAHKGRKKCLCGSSNCRGSFG* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4266 674 SMART set_7 496 649 IPR001214 GO:0005515
Lja3g4266 674 Pfam SAD/SRA domain 209 362 IPR003105 -
Lja3g4266 674 SUPERFAMILY PUA domain-like 192 379 IPR015947 -
Lja3g4266 674 ProSiteProfiles YDG domain profile. 210 358 IPR003105 -
Lja3g4266 674 Gene3D SET domain 379 673 IPR046341 -
Lja3g4266 674 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 15 672 - -
Lja3g4266 674 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 672 - -
Lja3g4266 674 SUPERFAMILY SET domain 397 671 IPR046341 -
Lja3g4266 674 ProSiteProfiles SET domain profile. 496 643 IPR001214 GO:0005515
Lja3g4266 674 ProSiteProfiles Post-SET domain profile. 658 674 IPR003616 -
Lja3g4266 674 SMART G9a_1 205 362 IPR003105 -
Lja3g4266 674 MobiDBLite consensus disorder prediction 118 134 - -
Lja3g4266 674 MobiDBLite consensus disorder prediction 91 152 - -
Lja3g4266 674 ProSiteProfiles Pre-SET domain profile. 433 493 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g4266 674 SMART preset_2 387 480 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g4266 674 Gene3D - 192 377 IPR036987 -
Lja3g4266 674 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g4266 674 Pfam SET domain 507 643 IPR001214 GO:0005515
Lja3g4266 674 Pfam Pre-SET motif 391 488 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja3g4266 674 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 55 674 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4266 Lja-Chr3 82577144 82579168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4266 18 674 Su(var)3-9 homologs AT5G04940 52.746 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja3g4266 SAD_SRA 4.4e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4266 K24405 - gmx:100812173 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4266 3 82577144 82579168 Lja3g4266 3 82577144 82579168 ECH