Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4264 ATGTCAGGGAAGAAGAAGAAAGTGAAACAGAGCGACAGTGATGAAGAAGACGACGTTTTCTACCACCGCTACTCTTCAACTTCATCCACCACCACCTCAAACCCTAACCCTAATCCAACCCAATCCCAATCCAAATCCAAAAAGGGTTCAGGATCCTCCTCGCTAGCACCATCGAAATCCACCATCTACGTTTCCAACATCGACTTCTCCCTCACAAACTCCGACCTCCACACCCTCTTCTCCACCTTCGGCAAAATCGCCCGCGTCACCGTCCTCAAAGACCGCGTCACGCGTCTCAGCCGCGGCGTCGCCTTCATCCAATTCGTCTCCGTCGCCGACGCCCGCCGCGCCGCCGAGCAAATGCACCGCAAGGTCCTCAACGGCCGCACACTCACCGCCTCTATTGCGGCCGACAACGGCCGCGCCCCTGAGTTCATCCGGAAGCGGCTTTACAACGACGAGTCCCGCTGCTTCGAGTGTGGCGTTTCTGGTCACCTGTCGTATGATTGCCCCCGGAATCAGCTTGGCCCGAGGCCGCGACCCGAGCCGAAGAAGCCCCGCCGAGGACCGCCCAGGGGCGGTGGCGGAGGGGAATACGCAGAGGATGATGATGATGAGGAGGAGGAGGATGGGGGACGCGGCGGTGCGGAGAGATTTGAGGATGATAACTGGGCTTCTGTGGTGGATGATGGAGCGGATGAGAGGCTGTTGGGGAGGAATGGAGATGATGAAGCTGTGGCGGCGAAGAAGAAGAAGGCTAAGAAAGCTGGGTATTTCAGTGATGAGAGTGATCATGATGATGATGATTGA 810 0.5741 MSGKKKKVKQSDSDEEDDVFYHRYSSTSSTTTSNPNPNPTQSQSKSKKGSGSSSLAPSKSTIYVSNIDFSLTNSDLHTLFSTFGKIARVTVLKDRVTRLSRGVAFIQFVSVADARRAAEQMHRKVLNGRTLTASIAADNGRAPEFIRKRLYNDESRCFECGVSGHLSYDCPRNQLGPRPRPEPKKPRRGPPRGGGGGEYAEDDDDEEEEDGGRGGAERFEDDNWASVVDDGADERLLGRNGDDEAVAAKKKKAKKAGYFSDESDHDDDD* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4264 269 MobiDBLite consensus disorder prediction 212 262 - -
Lja3g4264 269 MobiDBLite consensus disorder prediction 169 269 - -
Lja3g4264 269 ProSiteProfiles Zinc finger CCHC-type profile. 156 172 IPR001878 GO:0003676|GO:0008270
Lja3g4264 269 SUPERFAMILY Retrovirus zinc finger-like domains 143 173 IPR036875 GO:0003676|GO:0008270
Lja3g4264 269 MobiDBLite consensus disorder prediction 1 57 - -
Lja3g4264 269 Gene3D - 138 187 - -
Lja3g4264 269 SUPERFAMILY RNA-binding domain, RBD 34 143 IPR035979 GO:0003676
Lja3g4264 269 Gene3D - 28 221 IPR012677 -
Lja3g4264 269 SMART rrm2_1 61 134 IPR003954 GO:0003676
Lja3g4264 269 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 267 - -
Lja3g4264 269 MobiDBLite consensus disorder prediction 23 57 - -
Lja3g4264 269 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Lja3g4264 269 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 267 IPR044598 GO:0000398|GO:0005689
Lja3g4264 269 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g4264 269 SMART rrm1_1 61 134 IPR000504 GO:0003723
Lja3g4264 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Lja3g4264 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Lja3g4264 269 Pfam Zinc knuckle 156 171 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4264 Lja-Chr3 82565700 82566862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4264 60 136 Eukaryotic Initiation Factors Gene Family AT4G34110 31.169 3.82e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4264 K13154 - gmx:100814914 275.404