Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4262 ATGTCTCAACAAGAGGTAGTTTGCTCTGTGTGCAATAACAGGAGACCAAAACTAGAATGGAAGAGAGACTTCACATATGCTGAGCTGCATGCAGCCACACAAGGTTTTTCCCTGAAGAACTTTCTGTCAGAAGGTGGGTATGGTTCTGTCTACAAAGGGGTGCTGCATGGACATAAGATTGCTGTTAAGAAACATGTCCATGCAAGCTACAAAGCAGAGAGGGAATTCAAGTCTGAAGTTGATGCACTCAGCAAAGCAAGACATGAGAATGTGGTCATGCTGCTGGGATCATGCTCAGAAGGAAGCCACAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTGGACCCACATTTATCTCAACATTCTCGTAAACCTCTTTGCTGGCAAGACAGGATGAAGATAGCTAATGGAGCTGCCAAAGGATTGCTATACCTGCACGAGAACAACATCATACACAGGGATATTACAACAAACAACATTCTTCTCACACATGATTATGAAGTATTGCTGGGTGATTTTGGTTTGGCTAAAATTGTAACTGAAGATCACTCAAGCTCCATAGACTGTGTTGGGAATCAGGCATATTGGGCACCAGAATATGCAGAATTTGGTAAAGTTTCAATTAAGACAGATGTGTATTCTTTTGGGATGGTTCTACTACAGCTGATAACTGGGATGAGGACCACAGACAGACGGCTTGGAGAAAAAGGTCTAGTGGGATGGGCCAGATCACAACTAAGAGATGGGGAATGTCAAAGATTTATAGATAGAAGGATGATGAACTCACATGATTGCCATCAAGTCTTTTGGATGTGTCGTCTAGCTGGAAATTGTCTCAAGAAAGATCCTAATAAGCGATTGGATATGACAAAAGTGGTCAAAGCCTTAAGTCATATAGTCGAAGGTTGCAGTTGCTGCATCATGGGGAAAGAGCATACCGTTGCCATGTTAGGCTATTCTAAGTTGAAAGATGATTTACAGGACTATTCAGAATCAGAAACTGAAAGTCAGATTATTGTTAGATCCAACAGTGTAAAATAG 1047 0.4155 MSQQEVVCSVCNNRRPKLEWKRDFTYAELHAATQGFSLKNFLSEGGYGSVYKGVLHGHKIAVKKHVHASYKAEREFKSEVDALSKARHENVVMLLGSCSEGSHRLLVYEYVCNGSLDPHLSQHSRKPLCWQDRMKIANGAAKGLLYLHENNIIHRDITTNNILLTHDYEVLLGDFGLAKIVTEDHSSSIDCVGNQAYWAPEYAEFGKVSIKTDVYSFGMVLLQLITGMRTTDRRLGEKGLVGWARSQLRDGECQRFIDRRMMNSHDCHQVFWMCRLAGNCLKKDPNKRLDMTKVVKALSHIVEGCSCCIMGKEHTVAMLGYSKLKDDLQDYSESETESQIIVRSNSVK* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4262 348 PIRSF ILK 10 314 - -
Lja3g4262 348 ProSiteProfiles Protein kinase domain profile. 36 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4262 348 ProSitePatterns Tyrosine protein kinases specific active-site signature. 152 164 IPR008266 GO:0004672|GO:0006468
Lja3g4262 348 SUPERFAMILY Protein kinase-like (PK-like) 19 302 IPR011009 -
Lja3g4262 348 Gene3D Transferase(Phosphotransferase) domain 1 111 313 - -
Lja3g4262 348 PANTHER OS01G0253100 PROTEIN 5 323 IPR045271 GO:0004714|GO:0006468
Lja3g4262 348 Pfam Protein tyrosine and serine/threonine kinase 38 298 IPR001245 GO:0004672|GO:0006468
Lja3g4262 348 Gene3D Phosphorylase Kinase; domain 1 8 110 - -
Lja3g4262 348 PANTHER TYROSINE KINASE FAMILY PROTEIN 5 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4262 Lja-Chr3 82553660 82556107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4262 24 332 Trihelix Transcription Factor Family AT5G38560 40.663 5.50e-73 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lja3g4262 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4262 - - mtr:MTR_3g011630 514.998