Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4256 ATGGGGTTTGAACCAGTGGTTTGGTATTGCCAGCCAGAAGCAAACAGTGTTTGGGGTAAAATGGTGGATAGTGCTTTTGGGTCATATACACCTTGTGCAATTAACACTCTTGTTATCTCCATCTCCAATTTGGCTCTGATGGGCCTGTGCTTGTGTCGAATATGGCTTACCATAAGCAATGCAAAAGCTCAGAGGTTTTGTTTGAAATCAAATTACTATAACTATGTTCTGGGAATGTTAGCTGGTTATTGTGCTGCTCAGCCTTTGTTGAGATTATTTACTGGAATTTCAGCCTTCAACCTGAATGGGGAAACTGGCTTTGCTCCTTTTGAGATAACAGCTCTGATCATTGAATCACTAACTTGGTGCTCAATGATAATTCTCATCCTCATGGAAACCAAGGTTTATATCCGGCAATTTAGATGGTGGGTGCGGTGTGGAGTTATTTATGTTTGGGTAGGAGATATTGTAATGCTTAACCTTCTTCTGTCCGTGAAAGATTCCTGCAGCAGATCTGCTCTGTTTCTCTATATTAGCACTGTTATCTGCCAGGTGTTGTTTGGTACCTTGCTTCTTGTTTACATTCCTAAATTGGTTCCTTATTCTGGATCTGATCATGTAACAATGTACGCTGAGCTACCTGACAATGGTGAATATGAACCACTTTGTGGAGAAGATCAAGTTTGCCCTGAGATGCGTGCCAATCTATTCTCTAGATTGTGTTTTGGATGGATAACTCCACTCATGCAACAAGGATACAGAAAACCCGTCACTGAGAAGGATGTTTGGAAGCTAGACAAATGGGATCAAACAGAGACATTAACTGAAAAGTTCCGAAGATGTTGGATGTTAGAATTTCAAAGCTCTAACCCTTGGCTTTTAAGAGCATTGAACAACAGCCTGGGAAAAAGGTTTTGGTGGGGAGGCTTCTGTAAGATTGGAAATGATCTTTCTCAGTTTGTGGGGCCTGTTTTGCTGAACCATCTTTTAGATTCGATGCAAAATGGAGATCCAACTTGGATTGGTTACGTCTACGCCTTCTCCATATTTGTTGGAGTGTCAGCTGGTGTTCTATGTGAAGCACAGTATTTCCAGAACGTTATGCGTGTTGGTTTTCAGCTTAGATCAACATTGGTGGCTGAGATATTTAGAAAATCTTTGAGGCTAACACAAGAAGATCGAAAGAATTTCACATCTGGGAAGCTTATGAATATGATAACAACAGATGCGAACGCACTACAGCAAGTATGTCAACAACTTCACGCACTGTGGTCAGCACCATTCCGTATCATCGTAGCTATGGTTCTCCTATACCAGCAATTAGGTGTTGCGTCCCTTCTTGGATCACTAATGCTAGTTCTCATTGTCCCTCTACAGACATTTGTGATTGGCAAAACGCGAATGCTATCAAAGGAAGGACTAAAACAGACAGACAAAAGGGTTGGTCTCATGAATGAAATTCTGGCTGCCATGGACACAGTAAAATGTTATGCATGGGAAACAAGCTTTCAATCTAGAATTCAGAGCATACGAGATGAAGAGCTATCATGGTTCCGCAAAGCACAGCTTGTATATGCTCTCAACTCTTTTATATTAAACAGCATGCCAGTTCTTGTGACAGTGACCACATTTGGAATGTTTACTTTACTTGGTGGAGAATTGACACCTTCAAGGGCATTTACCTCGCTATCTCTGTTTTCAGTTTTGCGGTTTCCTTTATATATGCTTCCAAGTTTACTAAGTCAGATAGCAAATGCAAAGGTCTCCTTGCAGCGTTTGGAGGAACTGTTCTTGGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGTACCAGGACTTCCTGCCATCTCAATTAGTAATGGATACTTTTCATGGGATCCTAAGGCAGAGAAGCCTACATTATCAAATATCAATTTGGAAATACCAATTGGCAGCTTAGTTGCAATTATTGGTGGTACTGGAGAAGGGAAAACATCACTTATTTCAGCAATGATTGGAGAGCTACCTCCATTAGCAGATGCAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGGTTTCATGGATTTACAATGCTACAGTTCGTGAAAATATATTATTTGGATCAAAATTCGAACATGAAAGATATTGGAAGGCTATCGACGTCGCTGCTTTACATCATGATCTCAACTTCCTACCTGGACGTGATTTAACAGAGATTGGAGAAAGAGGAGTGAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCTTAGCTAGGGCTGTATACTCGAATTCGGATGTGTATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATGTTGCACAGGAGGTTTTCGGCAACTGTATAAAGGAAGGGCTGCGAGGAAAAACCAGGGTTCTTGTCACCAATCAACTACACTTTCTCCCTCAGGTGGATAAAATTATTCTGGTTAGTGAAGGCATGATTAAGGAGCAGGGAACCTTTGAGGAGTTGTCAAAATGTGGGCATCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACATCAAGCAGATAGTAACGAAGATAGAGATAGTCATGATAACGATTTACCCTTAAACAATGAGGCAATTGTAGAGTTACCAAATGGTGCAAGCTATGAAAAGAAGGGAAAATTACAAAAATCAGTACTTGTTAAGAAAGAAGAGCGGGAGACAGGTGTGGTTAGCTGGAAAGTTATAACGAGGTACAAATCTGCTCTGGGAGGACTGTGGGTAGTTCTCATACTCTTTGGATGCTATACGTTAACAGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGCGTTTGGACATCTCAAGATTCTGCTGCAGCTGATGAAACAGAATATTTTCTTTTCATCTATGCACTTTTCTCATTTGGACAGGTAACTGTGACACTTGCAAACTCTTATTGGTTGATCATTTCAAGTCTTCGCGCTGCCAAAAGATTGCATGATGCCATGCTAGATAAAATCCTGAGCGCTCCAATGATATTCTTCCAAACCAACCCTGTTGGTCGCATAATTAATAGGTTTGCAAAAGACACGGGAGATATAGATATGTATGTTTTTGCGTTGGTGAATGGGTTTCTGGGGCAAGTGTGGCAGTTAGTTTCGACATTTGTTCTTATCGGCACAGTGAGCACCATATCCCTGTGGGCCATAATGCCACTACTTACCATCTTTTATGCAGCTTATATTTATTACCAGAGCACAGCTCGAGAGGTGAAGCGCTTGGATTCCATTACAAGATCTCCTGTTTATGCGCATTTTGGGGAATCATTGAATGGTTTGTCAAGCATTCGCGCTTACAAAGCATATGATAGGATGGCACAGATCAATGGAAAATTCATGGATAACAACATAAGATTCACTCTTGTCAACATTAGTTCGAACCGGTGGTTGACCATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTGATAGCAACATTCGCTGTCCTGCAAAATGGAAGAGCTGAAAACAAGGCAATGATTGCGTCTTCAATGGGCCTACTTCTCAGTTACACTTTGAACATAACAAATCTCTTGAGCGGTGCCCTCAGACAAGCAAGCAGAGCTGAGAACAGTCTAAATGCGGTTGAGCGCGTTGACACCTATATAAATTTAGAATCCGAGGCTCCAGGTATAGTTGAGGAAAACCGTCCACCACCAGGATGGCCGACAACTGGATCGATTGAGTTTGAGAATGTTGTTCTCACATACAGGCCTGAACTTCCTCCAGTTCTGCATGGAGTGTCTTTCACAGTATGTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCGTTATTCCGGATTGTGGAACTACAAAGAGGAAGAATCACTATTGATGGTTGTGATGTTTCGACAATTGGACTAGCAGATCTGCGAAAAGTTCTCACCATCATACCGCAATCGCCAGTTCTGTTCTCTGGAACTGTTCGCTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAATCTTTAGAAAGGGCGCATTTGAAGGATGTAATTAGAAGAAATCCACTTGGCCTAGATGCTCAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTCATAAGTCTAGCAAGAGCATTGCTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCCCTTATCCAGAAAACTATCCGACAAGAATTCCAGTCTTGCACCATGCTCATCATTGCACACAGATTAAATACAATTATTGACTGCGATCGGATTCTGTTGCTTGATGCTGGCCGGGTTCTTGAATATGGTTCACCAGAGGAGCTCTTAAAAAATGAAGAAAGTGCATTCAATAAGATGGTTCAAAGCACTGGACCTGCAAATGCTGAGTATTTATGTAGCCTAGTGTTTGGAAGGACAAAGAACAATTCTGGTGAATATAACAAGGGGCAAGAAAGCCACACGAGACAGTTAGCTTTTACCCATTGGGCTGCTGCTACCAAGTTTGCCATAGCTTCTACCCTTTCTTCTGTACACAATAACCTTCAAAAGCCTAGTTCTAAGGAGAATAAAGATTTCCTTGATGAAACAAAGGATGCAGTGACAACACTTCAGGAAGTTCTAGAGGGGAAGCATGATGAAGCCATAGAAGAGACACTGACTAAATTCCATGTTCCAACATATAGATGGTGGTCCACCCTCCATCAAGTTATTGAAGGTCTTGCTATCTTGATCAGGTTGCCTCCAGACAACATTCAACAATTAGAACCTGATTTTGAAGGAAGATCCTTTGACTAA 4851 0.4137 MGFEPVVWYCQPEANSVWGKMVDSAFGSYTPCAINTLVISISNLALMGLCLCRIWLTISNAKAQRFCLKSNYYNYVLGMLAGYCAAQPLLRLFTGISAFNLNGETGFAPFEITALIIESLTWCSMIILILMETKVYIRQFRWWVRCGVIYVWVGDIVMLNLLLSVKDSCSRSALFLYISTVICQVLFGTLLLVYIPKLVPYSGSDHVTMYAELPDNGEYEPLCGEDQVCPEMRANLFSRLCFGWITPLMQQGYRKPVTEKDVWKLDKWDQTETLTEKFRRCWMLEFQSSNPWLLRALNNSLGKRFWWGGFCKIGNDLSQFVGPVLLNHLLDSMQNGDPTWIGYVYAFSIFVGVSAGVLCEAQYFQNVMRVGFQLRSTLVAEIFRKSLRLTQEDRKNFTSGKLMNMITTDANALQQVCQQLHALWSAPFRIIVAMVLLYQQLGVASLLGSLMLVLIVPLQTFVIGKTRMLSKEGLKQTDKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRDEELSWFRKAQLVYALNSFILNSMPVLVTVTTFGMFTLLGGELTPSRAFTSLSLFSVLRFPLYMLPSLLSQIANAKVSLQRLEELFLAEERNLKQNPPIVPGLPAISISNGYFSWDPKAEKPTLSNINLEIPIGSLVAIIGGTGEGKTSLISAMIGELPPLADANATIRGTVAYVPQVSWIYNATVRENILFGSKFEHERYWKAIDVAALHHDLNFLPGRDLTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHVAQEVFGNCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELSKCGHLFQKLMENAGKMEHQADSNEDRDSHDNDLPLNNEAIVELPNGASYEKKGKLQKSVLVKKEERETGVVSWKVITRYKSALGGLWVVLILFGCYTLTEVLRISSSTWLSVWTSQDSAAADETEYFLFIYALFSFGQVTVTLANSYWLIISSLRAAKRLHDAMLDKILSAPMIFFQTNPVGRIINRFAKDTGDIDMYVFALVNGFLGQVWQLVSTFVLIGTVSTISLWAIMPLLTIFYAAYIYYQSTAREVKRLDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAQINGKFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNGRAENKAMIASSMGLLLSYTLNITNLLSGALRQASRAENSLNAVERVDTYINLESEAPGIVEENRPPPGWPTTGSIEFENVVLTYRPELPPVLHGVSFTVCPTEKIGVVGRTGAGKSSMLNALFRIVELQRGRITIDGCDVSTIGLADLRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNPLGLDAQVSEGGDNFSVGQRQLISLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCDRILLLDAGRVLEYGSPEELLKNEESAFNKMVQSTGPANAEYLCSLVFGRTKNNSGEYNKGQESHTRQLAFTHWAAATKFAIASTLSSVHNNLQKPSSKENKDFLDETKDAVTTLQEVLEGKHDEAIEETLTKFHVPTYRWWSTLHQVIEGLAILIRLPPDNIQQLEPDFEGRSFD* 1617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4256 1616 ProSitePatterns ABC transporters family signature. 743 757 IPR017871 GO:0005524
Lja3g4256 1616 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 919 1202 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g4256 1616 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 46 1494 - -
Lja3g4256 1616 Gene3D ABC transporter type 1, transmembrane domain 286 600 IPR036640 GO:0005524|GO:0016021
Lja3g4256 1616 Gene3D ABC transporter type 1, transmembrane domain 880 1220 IPR036640 GO:0005524|GO:0016021
Lja3g4256 1616 CDD ABC_6TM_ABCC_D2 918 1214 IPR044726 GO:0140359
Lja3g4256 1616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1471 IPR027417 -
Lja3g4256 1616 CDD ABCC_MRP_domain1 617 817 - -
Lja3g4256 1616 Coils Coil 583 603 - -
Lja3g4256 1616 SUPERFAMILY ABC transporter transmembrane region 915 1219 IPR036640 GO:0005524|GO:0016021
Lja3g4256 1616 Pfam ABC transporter 1256 1404 IPR003439 GO:0005524
Lja3g4256 1616 CDD ABC_6TM_ABCC_D1 307 593 IPR044746 GO:0140359
Lja3g4256 1616 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 46 1494 - -
Lja3g4256 1616 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1473 IPR003439 GO:0005524
Lja3g4256 1616 CDD ABCC_MRP_domain2 1237 1457 - -
Lja3g4256 1616 ProSitePatterns ABC transporters family signature. 1376 1390 IPR017871 GO:0005524
Lja3g4256 1616 Gene3D - 1223 1475 IPR027417 -
Lja3g4256 1616 Pfam ABC transporter 635 770 IPR003439 GO:0005524
Lja3g4256 1616 SMART AAA_5 1265 1458 IPR003593 -
Lja3g4256 1616 SMART AAA_5 644 824 IPR003593 -
Lja3g4256 1616 Pfam ABC transporter transmembrane region 308 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g4256 1616 Pfam ABC transporter transmembrane region 919 1166 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g4256 1616 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 841 IPR003439 GO:0005524
Lja3g4256 1616 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 585 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g4256 1616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 840 IPR027417 -
Lja3g4256 1616 Gene3D - 601 865 IPR027417 -
Lja3g4256 1616 SUPERFAMILY ABC transporter transmembrane region 291 593 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4256 Lja-Chr3 82488613 82510559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4256 624 830 Calmodulin-binding Proteins AT2G36910 29.545 2.01e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4256 - K05665 gmx:100811691 2739.14