LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4253	ATGGTGCCAACAAAACTCACCCTTATATTTCTTGGCTTCATGACCCTTTTCACCACAGCAACTACACAGTCCCCAAACTATGTAGGTGATCACTGCCACAACTCAACAGAACAAGCCCTGACCCCTGCATACAAAACCAACCTTGAAAAACTCCTCTCCTTGCTCTCATCTGATGCCACCACAAGCAAAGGGTATAACCATACCAGCATAGGAACCAATACTGCTGATGCTGTTTATGGCCTCTATGACTGCAGGGGTGATGTAACAGGATCATTCTGCCAGTTCTGTGTCTCCAATGCAGCCTCAGATGTTCTTCAGCGCTGTCCCAACAGAGCTTCTGCTGTGATGTGGTTCAACTTCTGCATCCTCAGGTACTCCAACCATAATTTCTTTGGGAACCTTACAACAAACCCATCATGGCAAATTTTGGGCACCAAGAACATTACTGACCCAACGGAGCCTCAGAAAGCAGAGGAGTATATGCAGAGTTTGGTTAGAGAAGCCACTGTGGAGACCAACAAGTTGTATGCAAGGGGGGAGTTCAATTTGAGCCACTCTGAGGAAAGGTATGCATTTGTGCAGTGTAGTAGGGACATTACTAAGGAGGAGTGCAGTGATTGTTTGGAGGAAATGTTAGGAAAAGTTCCTAAATGTTGTGGGACAAAGAAGGGGTGGCAGATTTTGGCTCCAAGCTGTTTGATAAAGTATGACGATTTCATGTTCTACCAGCTTACTGATCAAACTTTTTCTCCTTTGCCTAGTCCAGCCACACAAGGAGATACAAGTAAGTCAAGAACCTCGATCATCATAATCATAGTCAGTGTGTTTATGGCACTAGCTCTACTAAGTTGTTGTATCTACTACTCGTGGAGACGGTATCTTTCAAGCAAAGATGTACTGCAATCAGCAGAGACCATTCCTATTTCATTTCATGGACATAATCAAAGAGAGGAGTCACTGATTTCAGACCTTCCTATAATTCCTCTAATTTGGATTCGGCAAAGCACTAACAACTTTTCAGAGTCTTGTAAACTAGGAGAAGGTGGATTTGGCCCTGTTTATAAGGGTAATTTACAAGATGGAATAGAAGTTGCTGTCAAAAGGCTGTCTCAAACATCTGGTCAAGGTTTAGTGGAGTTCAAAAATGAAGTAATCTTTATAGCGAAATTGCAACACAGGAACCTTGTTAAACTCTTGGGTTGTTGCATTGAGGAAAATGAAAAGTTGCTTGTATATGAGTACATGCCAAATTCTAGCCTCGACTCTCACTTGTTCAATTATGAAAAACGAAAGCAACTAGATTGGAAGTTACGGCTGAGCATTATCAATGGAATTGCAAAAGGACTTCTGTACCTTCATGAAGACTCTAGACTAAGAGTAATCCATAGAGATTTGAAAGCTAGCAATGTTCTCCTGGATCAAGAGATGAATCCCAAAATTTCAGATTTTGGATTGGCAAGGGCCTTTGAAAATGGACAGACTCGGGAAAATACAATAAGAATTATGGGAACTTATGGATACATGTCTCCAGAGTATGCTATGGAAGGGTTGTATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTACTAGAAATCATTTGTGGGAAAAGAAACAGTGGATTCTATCTTGCAGAACATGGCCAGAGTCTACTCATATATAGTTGGAGACTTTTGTGTGAAGGAAAAAGCTTAGAACTGTTAGATCCAATGCTAGAGAAGACATACATAGCTAATGAAGTTAAGAAAATCATACACATTGGTTTGTTGTGTGTACAAGAGGATGCAGGAGATAGACCAACCATGTCCATGGTTGTTGTCATGCTGGCAAGTGACACAATGTCACTTCCCAACCCTAATCATCCTGCATTTTCAGTTGGTAGAAAGATCAGGGAAGAAGAATCAACATCAAAAGCTTCTGAGGATCCTTCTGTTAATGAAGTAACTATGTCAAATATTTGTCCTAGGTAG	1974	0.4103	MVPTKLTLIFLGFMTLFTTATTQSPNYVGDHCHNSTEQALTPAYKTNLEKLLSLLSSDATTSKGYNHTSIGTNTADAVYGLYDCRGDVTGSFCQFCVSNAASDVLQRCPNRASAVMWFNFCILRYSNHNFFGNLTTNPSWQILGTKNITDPTEPQKAEEYMQSLVREATVETNKLYARGEFNLSHSEERYAFVQCSRDITKEECSDCLEEMLGKVPKCCGTKKGWQILAPSCLIKYDDFMFYQLTDQTFSPLPSPATQGDTSKSRTSIIIIIVSVFMALALLSCCIYYSWRRYLSSKDVLQSAETIPISFHGHNQREESLISDLPIIPLIWIRQSTNNFSESCKLGEGGFGPVYKGNLQDGIEVAVKRLSQTSGQGLVEFKNEVIFIAKLQHRNLVKLLGCCIEENEKLLVYEYMPNSSLDSHLFNYEKRKQLDWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARAFENGQTRENTIRIMGTYGYMSPEYAMEGLYSVKSDVFSFGVLLLEIICGKRNSGFYLAEHGQSLLIYSWRLLCEGKSLELLDPMLEKTYIANEVKKIIHIGLLCVQEDAGDRPTMSMVVVMLASDTMSLPNPNHPAFSVGRKIREEESTSKASEDPSVNEVTMSNICPR*	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4253	657	Gene3D	Transferase(Phosphotransferase) domain 1	415	619	-	-
	Lja3g4253	657	Gene3D	-	26	130	IPR038408	-
	Lja3g4253	657	Gene3D	-	138	241	IPR038408	-
	Lja3g4253	657	PANTHER	PROTEIN KINASE DOMAIN	17	654	-	-
	Lja3g4253	657	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Lja3g4253	657	MobiDBLite	consensus disorder prediction	642	657	-	-
	Lja3g4253	657	ProSiteProfiles	Protein kinase domain profile.	339	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4253	657	MobiDBLite	consensus disorder prediction	630	657	-	-
	Lja3g4253	657	ProSiteProfiles	Gnk2-homologous domain profile.	136	241	IPR002902	-
	Lja3g4253	657	SUPERFAMILY	Protein kinase-like (PK-like)	322	627	IPR011009	-
	Lja3g4253	657	Pfam	Salt stress response/antifungal	157	237	IPR002902	-
	Lja3g4253	657	Pfam	Salt stress response/antifungal	32	127	IPR002902	-
	Lja3g4253	657	Gene3D	Phosphorylase Kinase; domain 1	308	414	-	-
	Lja3g4253	657	CDD	STKc_IRAK	345	610	-	-
	Lja3g4253	657	Pfam	Protein tyrosine and serine/threonine kinase	343	609	IPR001245	GO:0004672\|GO:0006468
	Lja3g4253	657	SMART	serkin_6	339	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g4253	657	Pfam	Domain of unknown function (DUF3403)	612	657	IPR021820	GO:0004674
	Lja3g4253	657	ProSiteProfiles	Gnk2-homologous domain profile.	26	130	IPR002902	-
	Lja3g4253	657	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	17	654	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g4253	Lja-Chr3	82408251	82415906	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g4253	9	644	Receptor kinase-like Gene Family	AT4G05200	42.145	3.40e-173	508

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lja3g4253		PK_Tyr_Ser-Thr	2.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g4253	-		-	lja:Lj0g3v0351729.1	1104.74