Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4252 ATGTTGATCATAACACATAGTGATGGTAGCAGCAGCAGAAAAATGCTCTGCCTCTATCTATGGATATTCTTCACCATCAATTTTTCATCCCTCTTCTGCTTTTCTACTAGCCAGAACAACACAACAACAGATGTTCCACTTGATTACAGATACGCATGTTTGGATCAATCTTCATCTCCTCCATCCACTACATACCAAACAAACCTCAACAACTTGTTATCTTCACTCTCCTCTGATTCTGCTACAAGCAATGGTTTTGGAAACAGAACTCTAGGCAATGATCAAACCAACATGGTTTATGGACTTTATCTTTGTCGCGGTGACGCGAACGCCACCCTTTGTCACTCATGTGTGCAAAACTCCAGCAGATTGTTGAGGCATCACTGCCCCAATAACACTTCAGCTATTCTTTGGTATCCCTATTGCCTCGTGAGGTACTCAAACCAGAACTTCTTTGGCAAACTCGAGATAAGGCCGCGGGTTCCGATGTTTGACGCCAAGCAGAATGATACTAGTGCTGGAGAGTTTGATGGTGATGCGAGGATTTTGATGAATGGTTTGATTCAAATGGGATCGGAGGCGCCGTTGATGTTTGGGACACACATGTTTAATATAAATGGGACTCAGAGAAGGTATGGTTGGGTGCAGTGCAGTAGGGATATTACTAGTGAGGAGTGCAGGACATGTTTGAGTTATATGCTTGAGGATGTTGAGAATTGTTGTGAGAAGAAGAAGGTGTGGCGTGTGTTTTCTCCTAGTTGTATCGTCATGTATGAGACTCAGCCATTCTTTTTGAATGATACTGCACCTCAGCAAGCCAAAGAAGAGGGTAACACAAAGTGGTGGATTATAATTATCATTGTTGTAATTGGAACTCTTGGAGTAGCTCTATTGGCTTTCAGCACTTACTACTACTTCTGGTGCTTCAAACGGAAAAAGGATAAACAAGCTATGCAAGAAAATGGCCTATATCCAATGTTTTCCAGAGATCAAGATGACAATGGAGAGAGTGTGAATTCTGACCTACCTATGATACCTCTGAGTACTATTCTAAAAAGTACTGATAATTTTTCTGATGCATATAAATTGGGGAAAGGTGGATTTGGCCCTGTCTACAAGGCTGTTTTGCCAGATGGAAGGCTAGTTGCTATTAAAAGGCTCTCAAAAACTTCTGTTCAAGGTATAGAGGAATTCAAGAATGAAGTGATGTTGATTGCGAAATTGCAGCACCGGAACCTTGTGAGACTGTTGACTTGCTGCATTGACCAAAATGAAAAGCTGCTTATCTATGAATACATGCCAAATTCAAGCCTTGATTTTCACCTATTTGATATGGTGAAGGGTGCAGAACTGGATTGGAAACATCGAACAAACATTATTAATGGGATTGCTAAAGGGCTCCTATATCTTCATGAGGACTCTAGACTCAGGGTTATTCACAGAGACCTAAAAGCTAGCAATATTCTATTAGATCATGAAATGAATCCAAAAATCTCGGACTTTGGACTAGCAAGAACATTTGGAGGAGACCAGGGGCAAGCAAATACAATCAGAATTGTGGGAACTTATGGATACATGGCTCCAGAATATGCTATGGAAGGCTTGTTTTCAGTGAAATCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATAAGTGGAAAAAAGAACAGCAAGTTCTACCTTTCAGAGAATGCCCAAAGCCTTCTAATATATGCATGGAACCTTTGGTGTGAAAGCAAATGTTTGGAAATGATGGACCCATTGATTGAAAAATCATGTGTACCTAGTGAAATTCTGAAGTGCATACACATTGCACTGTTGTGTGTGCAAGAAGATGCAGCAGATAGACCTACAATGTCAAGTGTCGTTCACATGCTTGTAAGTGACACAGTGACTCTCCCCTGCCCCACACGCCCTGCATTTTCTGTTGGAAGGGCTGTCTTAGAACGAGGGTCTTCATCAAATACTGCTTACTCTGTCAATGATGTAACGGTCACCGATGTGATTCCTAGGTGA 2022 0.4135 MLIITHSDGSSSRKMLCLYLWIFFTINFSSLFCFSTSQNNTTTDVPLDYRYACLDQSSSPPSTTYQTNLNNLLSSLSSDSATSNGFGNRTLGNDQTNMVYGLYLCRGDANATLCHSCVQNSSRLLRHHCPNNTSAILWYPYCLVRYSNQNFFGKLEIRPRVPMFDAKQNDTSAGEFDGDARILMNGLIQMGSEAPLMFGTHMFNINGTQRRYGWVQCSRDITSEECRTCLSYMLEDVENCCEKKKVWRVFSPSCIVMYETQPFFLNDTAPQQAKEEGNTKWWIIIIIVVIGTLGVALLAFSTYYYFWCFKRKKDKQAMQENGLYPMFSRDQDDNGESVNSDLPMIPLSTILKSTDNFSDAYKLGKGGFGPVYKAVLPDGRLVAIKRLSKTSVQGIEEFKNEVMLIAKLQHRNLVRLLTCCIDQNEKLLIYEYMPNSSLDFHLFDMVKGAELDWKHRTNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQGQANTIRIVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKKNSKFYLSENAQSLLIYAWNLWCESKCLEMMDPLIEKSCVPSEILKCIHIALLCVQEDAADRPTMSSVVHMLVSDTVTLPCPTRPAFSVGRAVLERGSSSNTAYSVNDVTVTDVIPR* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4252 673 CDD STKc_IRAK 363 628 - -
Lja3g4252 673 Gene3D Transferase(Phosphotransferase) domain 1 433 634 - -
Lja3g4252 673 ProSiteProfiles Gnk2-homologous domain profile. 47 151 IPR002902 -
Lja3g4252 673 Gene3D - 163 263 IPR038408 -
Lja3g4252 673 Gene3D - 47 151 IPR038408 -
Lja3g4252 673 ProSiteProfiles Gnk2-homologous domain profile. 158 263 IPR002902 -
Lja3g4252 673 Pfam Domain of unknown function (DUF3403) 630 673 IPR021820 GO:0004674
Lja3g4252 673 Pfam Salt stress response/antifungal 58 149 IPR002902 -
Lja3g4252 673 Pfam Salt stress response/antifungal 169 260 IPR002902 -
Lja3g4252 673 Gene3D Phosphorylase Kinase; domain 1 323 432 - -
Lja3g4252 673 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 41 670 - -
Lja3g4252 673 ProSiteProfiles Protein kinase domain profile. 357 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4252 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Lja3g4252 673 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 41 670 - -
Lja3g4252 673 SMART serkin_6 357 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4252 673 Pfam Protein kinase domain 359 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4252 673 SUPERFAMILY Protein kinase-like (PK-like) 340 644 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4252 Lja-Chr3 82402700 82407614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4252 25 673 Receptor kinase-like Gene Family AT4G05200 42.144 2.95e-176 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4252 Pkinase 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4252 - - gmx:100798691 1049.27