Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4249 ATGAGGAAAAAGCTTGATACTCGTTTCCCTGCGGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATTGCACTGGCAGTTCCTGTTTTAGTGTCTAAAGCTCTGGAATTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAGAGAGGAGCAAAGACAATGAATGCATTGCATCTGAAACATTGTGTTCAAAGCTATAATGTCTTTGACTTTTTGAGAGACATTGTCAGCACGGTTCCTGATTATGGGCATGGACATGGCCATGGCAACTCTGAGGGTGGAGCTGATGATCGTGCCCTTCCAAAGAGAAGGAAAGCTGCTGGGGATGATGGCAATGACAGTGATGAAGAAGCTAAGAGGAGTAAGATGCAGCTTGAGTTGGGCCACACTAGCAGTACTGGCAAGGGAAGAGGCCGAGGTAGAGGTAGAGGCCGAGGCCGTGGTCGAGGGGCTCGAACTGTAGAAAAAGAGACTAGTGTACACCAGGTTGAATCTGAGCCTTGCACCTCTATCCCAGAAAGTAGCAAAGATTTTCCTGATACAAGTGTGGCAATGTATAATGATCCAGAATCCAAGGAGTTATCAAAGGAAAACATTGCAGTCCCTGAGGAAAATGCTCAATCTCTCCGCAACATTGATCTGAATGCCAACTTAAATGAAAATGAGGACAAAGGTGCTAGCACAGCTGCTCAGGCCTCATTGCCTGAACCTGCGGAAACAGAGATTAAACACGAAGAAATTCCCGGCTGGTCCCTTTCTGACGTGGACAAGATGGCCATTGACAATATGCAGCTTGCAAACCTTGGTAGTAGAGTAGAAGATGATGAAGAAGATTATGATGAGGAAGGGTAA 876 0.4521 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSTVPDYGHGHGHGNSEGGADDRALPKRRKAAGDDGNDSDEEAKRSKMQLELGHTSSTGKGRGRGRGRGRGRGRGARTVEKETSVHQVESEPCTSIPESSKDFPDTSVAMYNDPESKELSKENIAVPEENAQSLRNIDLNANLNENEDKGASTAAQASLPEPAETEIKHEEIPGWSLSDVDKMAIDNMQLANLGSRVEDDEEDYDEEG* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4249 291 MobiDBLite consensus disorder prediction 231 257 - -
Lja3g4249 291 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 290 - -
Lja3g4249 291 MobiDBLite consensus disorder prediction 171 189 - -
Lja3g4249 291 MobiDBLite consensus disorder prediction 91 204 - -
Lja3g4249 291 MobiDBLite consensus disorder prediction 156 170 - -
Lja3g4249 291 PANTHER HISTONE SUPERFAMILY PROTEIN 1 290 - -
Lja3g4249 291 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Lja3g4249 291 MobiDBLite consensus disorder prediction 98 132 - -
Lja3g4249 291 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Lja3g4249 291 SUPERFAMILY Histone-fold 4 90 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4249 Lja-Chr3 82386318 82390314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4249 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.324 2.73e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja3g4249 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4249 K21752 - gmx:100810093 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4249 3 82386318 82390314 Lja3g4249 3 82386318 82390314 ECH