Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4246 ATGGCGGAAACAGCGGTGTTGTTTGTTCTGGACAAAGTGTACCAACTCCTACAAGAAGAAGGAACTTTGCTAACAGGTGTCCATAAAGAATTTGCAGACATCAAAGATGAACTGGAGAGCATTAGAGCCTTCCTCAGGGACGCGGACACAAGGGCTACAGATGAAGGCGACACGAACGAAGGAATAAAAACGTGGGTGAAGCAGCTGAGAGAAGCATCGTTTCACATAGAAGATGTGATTGATGAGTACGTCATGTATGTGGCGCCAAGGGTCAACCATTCAGGATGCATAGCCTCATCACTCCTAAAGATTGTCCACTTGATCAGGTCTTTGAAGTCTCGCCGCCAAGTAGCGTCTCAGATTCAAGACATTAAATCATCGGTCCATGGAATCAAAGAAAGAAGTGAAAGGTATAACTTTCAGTCACAAGGAGGATCGACCAGCTCTCGAGGGACAGAAGATGTCAAATGGGGTGATCCAAGAATGGCTTCCCTTTTCATTGAAGAAGAAGAAGTGGTGGGATTTGAATCTTCTCGAGATGAATTGAATACTTGGTTATTGGAGGGTGCAGCTGAGCGCACAGTGATTTCAGTGGTAGGGATGGGGGGGCTAGGTAAAACCGCTCTTGCCAAGCTAGTTTTTGACAGCCAGAAGATGACAGGGCATTTTGATTGTCTTGCTTTTGTCACAGTCTCTCAATCATACACCATGAGGGGGATATTGATAAACTTGATGGAGCAGTTTTGTAAAGAAACAAAGGAACCTCTTCCACTGAGTATGCACAACATGGACGAGAAGTCACTAATAACAGAAGTGAGGCAGTACCTTCAGCTAAAGAGGTACTTGGTTTTCTTTGATGATGTGTGGAAGCTGGAATTTTCTGATGAGATTGAACTTGCCATGCCTAATAGTAACAATGGGAGTAGGATCGTAATCACCACTAGAATGATGCACGTTGCTGATTTTTTTAAGAAATCTTTTCTGGTTCGTGTTCACAACCTACAATTTCTGCCTCCAAACAAGGCATGGGAACTCTTCTGCAAGAAAGCATTTAGAAATGAGCCTGAGAAGAATTGTCCAGCAGAACTCACGGATTTGTCTAATGAAATTGTTCAAAAATGCAAGGGTCTGCCACTAGCAATTGTGGCCATTGGTGGTCTCTTGTCAACAAAAGCTAAAAACATGTTTGAATGGCGAAAGGTGAGTCAAAATCTTGGTGTGGAATTAGAGCGTAACGCCCATTTAGCCAACTTAACAAGGATTTTATCCTTAAGTTATGATGACTTGCCTTACTATTTGAAATCATGTATGTTGTATTTTGGAATGTATCCAGAAGACTACTTCATTAGTCCTGTGAGACTGACGAGACAATGGATTGCTGAAGGGTTTGTTGCATCTGAGGACAAAGGAACTTTAGAGGAAGTTGCAAATGAGTACCTAAAAGAGTTAATATATAGAAGCTTGGTTCAAGTCTCGCACTTAGGCTTTGATGGGAAAATAAAAAGATGTCAAGTCCATGATTTACTACGTGAAGTGATCATTAGAAAAATAAAGGACTTTAATTTTTGCCATCTTGTGAATAAAGATGATCAGTCACTGGAAGTTGGCACAAGTAGACGCTTATCTATTGTGGCTAGTTCCAAAGATGTGCTGAGCTTCCCTGGTCCCTCACGTATTCGTGCTATCCATATGTTTGAAAAAGGTGAACTACCTGAAAACTTCATGAGTGAATTCTCTTCTAACTGCAAGCATTTGAAAGTACTTGATTTCGAAGATACTTTGTTGCGTTATGTTCCTGATAATTTGGGGGCTTGTTTTCACTTGAGGTACTTAAACTTGAAAAATACAAAAGTACAAGTTCTTCCTAAATCTATTGGCATGCTACTGAACTTGGAAACCTTGGACTTGAGACAAACACTTGTGCATGAGTTACCAAATGAGATAAAAAAGCTCACAAAGCTACGGCATCTTTCTGCTTACCACAGAAACCTTGAAGCAGATTATTCTGTTTTGGGAACTACGCGTGGGGTGGTGATGGAAAAGGGCATTGACCGCCTGACTGAACTACAAAGCCTTTCTTTTATTGACATTGATCATGGTGGACTCAACCTTGTCCAAGAGCTTAAAAAGTTGAGGCAGTTAAGGAGGTTAGGCTTGAGACAAGTACAGAGTGAATATGGGAATGCCTTATGTGCTTCAATGGCAGAGATGAAACACCTCGAATCTCTGAATATCACTGCAAAAGTTACGGATGAGATCATTGACTTCAATTTTATGTCATCTCCACCGCAACTTAGATGGCTCAATTTGAAAGCACGACTTCAACAATTGCCTGAATGGGTTCCAAAGCTTCACTATCTTGTTAAGCTAAGGCTGAGTTTGTCTATGTTTATCGAAGATCCACTTAAATCATTGAAGAACATGCCTAATCTATTACGGCTCTCTTTATGTGACAATGCCTATGATGGTGAAGTTTTGCATTTTGAAGCAAGGGGATTCCCAAAACTGAAAAAGCTGTTTCTTTCACGCTTGAATAGAGTTCACACCATTATTATAGACAATGAAGCTTTGCTTGATCTTGAATACATGCACTGGAACAAAATCCCCAAGTTGAAGGAGGTACCCTCTGGTATCAAACACTTGAAAAACCTTAAAGTTATCAACTTTGCTGATATGCCTGCTGAATTCATTGAAAGCATCAACCCTGATAATGGAAAAAACTTCTGTGTTATTAGTCATGTTCCCCTTGTATTCATTCGTCAAAAGGCCGGGCCAATGTTAAATGACTATGACGTCCGCACCATTCACTCTTCTAACAATGTTTCAACTATAAAGAAAATCAACCAGACTCTCCGTGCAGTAGCAGTTCACTATGGCGTGTCATGA 2886 0.4082 MAETAVLFVLDKVYQLLQEEGTLLTGVHKEFADIKDELESIRAFLRDADTRATDEGDTNEGIKTWVKQLREASFHIEDVIDEYVMYVAPRVNHSGCIASSLLKIVHLIRSLKSRRQVASQIQDIKSSVHGIKERSERYNFQSQGGSTSSRGTEDVKWGDPRMASLFIEEEEVVGFESSRDELNTWLLEGAAERTVISVVGMGGLGKTALAKLVFDSQKMTGHFDCLAFVTVSQSYTMRGILINLMEQFCKETKEPLPLSMHNMDEKSLITEVRQYLQLKRYLVFFDDVWKLEFSDEIELAMPNSNNGSRIVITTRMMHVADFFKKSFLVRVHNLQFLPPNKAWELFCKKAFRNEPEKNCPAELTDLSNEIVQKCKGLPLAIVAIGGLLSTKAKNMFEWRKVSQNLGVELERNAHLANLTRILSLSYDDLPYYLKSCMLYFGMYPEDYFISPVRLTRQWIAEGFVASEDKGTLEEVANEYLKELIYRSLVQVSHLGFDGKIKRCQVHDLLREVIIRKIKDFNFCHLVNKDDQSLEVGTSRRLSIVASSKDVLSFPGPSRIRAIHMFEKGELPENFMSEFSSNCKHLKVLDFEDTLLRYVPDNLGACFHLRYLNLKNTKVQVLPKSIGMLLNLETLDLRQTLVHELPNEIKKLTKLRHLSAYHRNLEADYSVLGTTRGVVMEKGIDRLTELQSLSFIDIDHGGLNLVQELKKLRQLRRLGLRQVQSEYGNALCASMAEMKHLESLNITAKVTDEIIDFNFMSSPPQLRWLNLKARLQQLPEWVPKLHYLVKLRLSLSMFIEDPLKSLKNMPNLLRLSLCDNAYDGEVLHFEARGFPKLKKLFLSRLNRVHTIIIDNEALLDLEYMHWNKIPKLKEVPSGIKHLKNLKVINFADMPAEFIESINPDNGKNFCVISHVPLVFIRQKAGPMLNDYDVRTIHSSNNVSTIKKINQTLRAVAVHYGVS* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4246 961 Gene3D - 4 118 - -
Lja3g4246 961 Pfam NB-ARC domain 178 428 IPR002182 GO:0043531
Lja3g4246 961 Gene3D - 162 327 IPR027417 -
Lja3g4246 961 PRINTS Disease resistance protein signature 195 210 - -
Lja3g4246 961 PRINTS Disease resistance protein signature 275 289 - -
Lja3g4246 961 PRINTS Disease resistance protein signature 831 847 - -
Lja3g4246 961 PRINTS Disease resistance protein signature 374 388 - -
Lja3g4246 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 440 IPR027417 -
Lja3g4246 961 CDD RX-CC_like 2 133 IPR038005 -
Lja3g4246 961 PANTHER - 30 896 - -
Lja3g4246 961 Gene3D Ribonuclease Inhibitor 556 916 IPR032675 -
Lja3g4246 961 Gene3D - 337 425 IPR042197 -
Lja3g4246 961 Pfam Rx N-terminal domain 5 89 IPR041118 -
Lja3g4246 961 PANTHER DISEASE RESISTANCE PROTEIN RP 30 896 IPR044974 GO:0006952
Lja3g4246 961 Gene3D - 426 516 IPR036388 -
Lja3g4246 961 SUPERFAMILY L domain-like 505 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4246 Lja-Chr3 82370265 82375238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4246 171 393 WRKY Transcription Factor Family AT5G45050 27.193 3.15e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4246 K13457 - gmx:100801561 1197.19