Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4244 ATGGCAGAAGCTGCAATTTCGTTTGCTCTGGAGCAAATTTTTCAACTCTTGAAAGAAAAAGGAGCTCTGTTGAAAGGCGTTCACAAAGAATTTGCTGACATAAAAGATGAACTAGAAATCATTTTAGCCTTCCTCAAAGATGCAGATAGGAAGGCTTCAGATGAAGGGAGTTCAAAAGATGGAATAAAAACTTGGGTGAAGCAGCTGAGAGAATTGTCTTTTCGTATAGAAGATGTCATTGCTGAGTACAATATTTATGTAGCACAAGGGACTCATCATGCTGGATACTCAGCTTTCCTCCAAAAAATTTCTCACACGATCACAACAGTAAAGCCTCTTCATCGGATAGCATCCGAGATTAAGGACATTAAGGAATCAGTTAGAGCACTCAAAGATAGAGGTGAAATGTACAACTGCAAGCCCTCACTTGAACATGGATCAAGAGGTGGCAAATGGCATGACCCTCGAATGGTTTCCCTTTTCATTGAAGAAGCTGAAGTTGTGGGATTTGACAGCCCAAGGAAGCAATTGGTTGATTGGTTAGTGGACGGATCTGCTGCGCGCACTGTGATTTCAGTGGTTGGAATGGGAGGACTCGGGAAAACCACTCTTACCAAGAATGTTTTTGACAATCAAAAGGTGAAAGGGCACTTCGATACACGTGCTTTCATCACAGTCTCTCAAACATACACAGTAGAAGCCTTGTTGCGGGACGTACTAAAACAATTCTATACTGAGACCAATGAGCCGTTTCCTGGAGCCATAAACACCATGAATACCGTTTCACTTGTAGCTGAAATGAGGAGTTACTTGCAGGAGAAGAGGTATGTAATAGTCTTTGATGATGTATGGAAAGTAGAATTTTGGGATGAGATCCAACTTGCTACACTTGATAACATGGGAAGTAGGATAGTAATCACAACCAGGAACTTGGAGGTTGCAAATTATTGTAAGAAATCATCTCTTGTTCGGGTGCACAAGTTGCAACCCTTGCCTCCAAGTAAAGCATGGGAACTCTTCTGCAAGAAGGCGTTTCAGTTTGATTTCAATGGAAATTGTCCACCAGAGCTAGAAGAGATGTCTAGTGAAATTGCTAAAAAATGTGAGGGGTTACCCCTTGCAATTGTGGCCATTGGGGGTCTTTTGTCAACAAAAGAGAAAACTGTGTTTGAATGGAAAAGACTATGCCAAAACCTTAGCTTTGAGTTAGGGCGAAATCCCCATTTAACTAGTTTGACAAGAATCTTAGCCCTCAGTTATGATGATTTGCCCCATTATTTGAAATCATGTTTCTTGTATTTTGGTATATATCCGGAGGACTATTCTATCAGATGCATGAGATTGGTTAGACAATGGATAGCTGAGGGATTTATTACAAATGAGGAGGAAACAACAACATTGGAGGAAGTTGCTGAACGATACTTGACAGAGCTGATCCACAGAAGCTTGGTTCAAGTTGAAGTTGACTACGACGGTAAGGCTTCAAGTTGCCGAGTCCATGATTTGCTATATCAAATGATCGTAGGAAAAGCGAAAGACTTGTGCTTTTGTCGTGTTGTTCTTAAAGATGATCATCCATCCCCTGATGTGATGACAGCTCGACGCTTGGCCATAGCAACTGATTCTTGTGATGTGCTTGGCAACATTGGACAATACTCACATATCAGGTCCATTTACATATTTGAAGCTAGTGGGAGGCCAGATGAATTGTTCAGTAAGTTCTTTGTAAAGTCTAAGCTTTTGAAAGTGTTGGATTTGGAAGCTACATCTTTGAATTCTGTTCCTGATGATTTGGGGAATATTTTTCACTTAAGGTACTTGAGCTTAAGGAAAACAAAAGTTAAGTGCATTCCGAAATCCATTGGTAAACTGCTGAACCTAGAGACCTTGGATCTTAGAAACACACTAGTGCAGGAGTTGCCTAGCCAGATATACAAACTCAAAAAGTTGCGCTATCTTCTAGTTTACTTCAGAAATAGAAGTAATACGATTCATGGTGAAACTGGAGTGCGGTTGAATGGAAGTATCGGAAACTTGACATCTCTACAAAAGCTTTATCATGTGGAGGCAGACCATGGTGGATTGAACCTGATAACAGAGCTGAGAAAGTTGAAGCAATTAAGGAAGTTGGGTTTAAAGAATGTAAGGACAGAGTTCGGAAATGCTTTATGTGACTCAATGCAAGATATGAGTTGTCTTGAGTCTCTTTCTGTGAGTGCCATTACAGAAGACGAAACCATAGATTTGCAGCGTATTTCATCTCTCCATCACCTTCGGAAACTTCACTTCTTTGGTCGCTTAGACAAGTTACCAGACTGGGTCACAAGGCTTCAGTATCTTGTTAGATTGTCAATTCATTTTTCCAAGTTGAAGGATGATCAACTGAAGTCACTTAAAGATCTACCGAATTTATTGCGTCTCTCAATCGCACGCGAAGCATATGTTGGTGAGTCATTGCATTTTGAAGTTGGATTTCAGAAACTGAAGAGACTATATCTTGTAGACTTGAATGAAGTTAGCTCCATTGTTATAGAAAACGGAGCTTTACCTGCTCTTGAACGGCTTCTATTGATGCGCTTGCCTCAACTAAAGGAGATGCCATCGAGCTTTCACCTACTAAAAAGCCTTGAAACTTTGTATTTGACTGATATGTCACATGAGTTCAACCAAAGCATTGATCCAGATCATGGACCTAAGTATTGGGTCATCAAACATGTGCAGATGGTATCGATTAGAGAAAAGGTTGGTCCAAATTTTCGCGACTACAACTATCGCACCATTCATCATCCGAGAGATACATGA 2802 0.4054 MAEAAISFALEQIFQLLKEKGALLKGVHKEFADIKDELEIILAFLKDADRKASDEGSSKDGIKTWVKQLRELSFRIEDVIAEYNIYVAQGTHHAGYSAFLQKISHTITTVKPLHRIASEIKDIKESVRALKDRGEMYNCKPSLEHGSRGGKWHDPRMVSLFIEEAEVVGFDSPRKQLVDWLVDGSAARTVISVVGMGGLGKTTLTKNVFDNQKVKGHFDTRAFITVSQTYTVEALLRDVLKQFYTETNEPFPGAINTMNTVSLVAEMRSYLQEKRYVIVFDDVWKVEFWDEIQLATLDNMGSRIVITTRNLEVANYCKKSSLVRVHKLQPLPPSKAWELFCKKAFQFDFNGNCPPELEEMSSEIAKKCEGLPLAIVAIGGLLSTKEKTVFEWKRLCQNLSFELGRNPHLTSLTRILALSYDDLPHYLKSCFLYFGIYPEDYSIRCMRLVRQWIAEGFITNEEETTTLEEVAERYLTELIHRSLVQVEVDYDGKASSCRVHDLLYQMIVGKAKDLCFCRVVLKDDHPSPDVMTARRLAIATDSCDVLGNIGQYSHIRSIYIFEASGRPDELFSKFFVKSKLLKVLDLEATSLNSVPDDLGNIFHLRYLSLRKTKVKCIPKSIGKLLNLETLDLRNTLVQELPSQIYKLKKLRYLLVYFRNRSNTIHGETGVRLNGSIGNLTSLQKLYHVEADHGGLNLITELRKLKQLRKLGLKNVRTEFGNALCDSMQDMSCLESLSVSAITEDETIDLQRISSLHHLRKLHFFGRLDKLPDWVTRLQYLVRLSIHFSKLKDDQLKSLKDLPNLLRLSIAREAYVGESLHFEVGFQKLKRLYLVDLNEVSSIVIENGALPALERLLLMRLPQLKEMPSSFHLLKSLETLYLTDMSHEFNQSIDPDHGPKYWVIKHVQMVSIREKVGPNFRDYNYRTIHHPRDT* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4244 933 SUPERFAMILY L domain-like 498 888 - -
Lja3g4244 933 PRINTS Disease resistance protein signature 368 382 - -
Lja3g4244 933 PRINTS Disease resistance protein signature 270 284 - -
Lja3g4244 933 PRINTS Disease resistance protein signature 826 842 - -
Lja3g4244 933 PRINTS Disease resistance protein signature 190 205 - -
Lja3g4244 933 Pfam NB-ARC domain 175 422 IPR002182 GO:0043531
Lja3g4244 933 Gene3D Ribonuclease Inhibitor 549 899 IPR032675 -
Lja3g4244 933 Gene3D - 331 419 IPR042197 -
Lja3g4244 933 Pfam Rx N-terminal domain 5 91 IPR041118 -
Lja3g4244 933 Gene3D - 156 325 IPR027417 -
Lja3g4244 933 Gene3D - 420 510 IPR036388 -
Lja3g4244 933 Gene3D - 4 117 - -
Lja3g4244 933 PANTHER - 30 890 - -
Lja3g4244 933 PANTHER DISEASE RESISTANCE PROTEIN RP 30 890 IPR044974 GO:0006952
Lja3g4244 933 CDD RX-CC_like 2 132 IPR038005 -
Lja3g4244 933 Coils Coil 113 133 - -
Lja3g4244 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 434 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4244 Lja-Chr3 82348567 82352984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4244 191 387 WRKY Transcription Factor Family AT5G45050 30.151 1.20e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4244 K13457 - gmx:100801561 961.059