Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4243 ATGGCAGAAGCTGCAATTTCATTTGCTCTGGGGCAAGTTCTCCAGCTCTTGAAAGAGAAAGGAGCTCTGCTGAAAGGCGTTCACAAAGAATTTGCAGACATGAAAAATGAGCTAGAAAGTATTGTAGCCTTCCTCAAAGATGCAGATAGAAAGGCTGCAGATGAAGGGAGTTCAAAAGATGGGATACAAACTTGGGTTAAGCAGCTGAGAGAATTGTCTTTTCGCATAGAAGATGTCATTGCTGAGTGCAATATTTATGTGGCACAGGGAACCCATCAAGTTGGATTCAAAAATTTTATTCAAAAGATTTCTCACATGATCACAACAGTAAAGCCTCTTCTTCAGATAGCATCGGAGATTCAAGACATTAAGGAATCTGTTCGAGTAATCAAAGAAAGAAGTGAAAGGTACAACTTTCACTACTCACTTGAACATGGATCACGAAGTGGCAGATGGCATGACCCTCGAATGGTTTCCCTTTTCATTGAAGAAGCTGAAGTTGTAGGATTTGAGGGCCCAAGGAATCAACTGGTTGATTGGTTAGTGGACGGATCTGCTGCGCGCACCGTGATTTCAGTGGTTGGAATGGGAGGGCTCGGGAAAACCACCCTTGCCAAGAATGTTTTTGACAACCAAAAGGTGAAAGGGCATTTTGATACACGTGCTATCATCACAGTTTCTCAAACATACACTGTAGAAGCATTATTGAGGAATGTACTAAAGCAATTCTATATGGAGACCAATGAGCCGCTTCCTGCCGCCATACGCACCATGGATACCATTTCACTTGTAGCTGAAATGAGGCGTTACTTGCAGGACAAGAGGTATGTAATAGTCTTTGATGACATATGGAAGTTAGAATTTTGGGATGAGATCCAACTTGCTACACTTGATAACAACATGGGAAGTAGGATAGTAATCACAACCAGGAACTTGGAGGTTGCATATTATTGTAAGAAATCATCTCTTGTTCGCGTGCACAAGTTGCAACCCTTGCCTTCAAATAAAGCATGGGAACTCTTCTGCAAGAAGGCGTTTCAGTTTGATCTCAATGGAAATTGTCCACCAGAGCTAGAAGAGATGTCTAGTGAAATTGCTAAAAAATGTGAGGGGTTACCACTTGCAATTGTGGCCATTGGGGGTCTTTTGTCAACCAAAGACAAAACTGTGTTTGAATGGAAAAGACTATGCCAAAACCTTAACTTTGAGCTGAGGAGAAATCCCCATTTAACTAGTTTGACAAGAATCTTAGCCCTCAGTTATGATGACTTGCCCCCTTATCTCAAATCATGTTTCTTGTATTTTGGTATATATCCAGAGGACTATCCTATCAGATGCATGAGATTGGTTAGACAATGGGTAGCTGAGGGGTTTGTTATAAATGAGGAGGAAACAACTTTGGAGGAAGTAGCTGAACAATACTTGACAGAGCTGATCCACAGAAGCTTGGTTCAAGTCTCTTTAGTTAACTTCGATGGTAAAGCTTCAATTTGCCGAGTCCATGATTTGCTACATCAAATGATCGTAGGAAAAGTGAAAGACTTGAGCTTTTCTCGTGTTGTTCTTGAAGATGATCAACCAACCCCTGGTGTAACAGCTCGACGCTTAGCCATAGCAACTGATTCTTTTGATGTGCTTAGCAACCTTGGAGAACAATACTCAAATGTGAGGTCCATTTACATTTTTGAAGCAGGTGGGTGGCCAGAGTACTTGTTCAGTAAGTTCTTTGTTAAGTCTAAGCTTTTGAAAGTGTTGGATTTGGAAGCTGCATCATTGAATTATGTTCCTAATGATTTGGGGAATATTTTTCACCTAAGGTACTTGAGCTTAAGGAAAACAAATGTTAGGTGTATTCCAAAATCCTTTGGTAAACTGCAGAACCTTGAGACCTTAGATCTTAGAGGAACACTAGTGCAGGAGTTGCCAATCCAGATATGCAAGCTTAAAAAATTACGCCATCTTCTAGTTTACTATAGAGATAGGATTCCTAGGAGTAATACGATTCATGGTGAAACTGGAGTGCGGTTGAATGGAAGTATCGGAAACTTGACATCTCTACAAAAGCTTTATCATGTGGAGGCAGACCATGATGGATTGAACCTCATAACAGAACTGAGAAAGTTGAAGCAATTAAGGAAGTTGGGGTTAAAGAATGTAAGGAGGGAGTTCGGAAATGCTTTATGCGACTCAATACAAGAGATGAGTTGCCTTGAATCTCTTTCTGTCAGTGCCATAGCTCAAGATGAAACCATAGATTTGCAGCTTATTTCATCTCTACTTCAGCTTCGAAAACTTCACTTGTTTGGTCGCTTAGACATGTTGCCAGACTGGGTCACAAGGCTCGAGTATCTTGTTAGGTTGTCAATTCATTTTTCCAAGTTGAAGGGTGATCAACTGAAGTCACTTAAAGATCTACCAAATTTGATGCGTCTCTCGATTGGACGTGATGCATATGTTGGTGAGTCATTGCATTTTGAAATGGGATTTCAGAAATTGAAGAGGCTATATCTTACAGACTTGAATGAAGTGAACTCTATTGTTATAGACAATGGAGCTTTACCTGCTCTTGAACGACTTTTATTGAGGCGCTTGCCCCAACTTAAGGACATGCCGTCAAGCTTTCACCTACTTAAAAGCCTTGAAATTTTGTATTTGACTGATATGCCACATGAGTTCAATCAAAGCGTTGATCCAGAACATGGACCTAAGTACTGGGTCATCAAGCATGTGCAGTTGGTATCGATTAGAGAACAGTTTGGTCCAAATATTCGGGACTACAACCATCGCACTATTCATCATCCAAGGGATATATGA 2814 0.4069 MAEAAISFALGQVLQLLKEKGALLKGVHKEFADMKNELESIVAFLKDADRKAADEGSSKDGIQTWVKQLRELSFRIEDVIAECNIYVAQGTHQVGFKNFIQKISHMITTVKPLLQIASEIQDIKESVRVIKERSERYNFHYSLEHGSRSGRWHDPRMVSLFIEEAEVVGFEGPRNQLVDWLVDGSAARTVISVVGMGGLGKTTLAKNVFDNQKVKGHFDTRAIITVSQTYTVEALLRNVLKQFYMETNEPLPAAIRTMDTISLVAEMRRYLQDKRYVIVFDDIWKLEFWDEIQLATLDNNMGSRIVITTRNLEVAYYCKKSSLVRVHKLQPLPSNKAWELFCKKAFQFDLNGNCPPELEEMSSEIAKKCEGLPLAIVAIGGLLSTKDKTVFEWKRLCQNLNFELRRNPHLTSLTRILALSYDDLPPYLKSCFLYFGIYPEDYPIRCMRLVRQWVAEGFVINEEETTLEEVAEQYLTELIHRSLVQVSLVNFDGKASICRVHDLLHQMIVGKVKDLSFSRVVLEDDQPTPGVTARRLAIATDSFDVLSNLGEQYSNVRSIYIFEAGGWPEYLFSKFFVKSKLLKVLDLEAASLNYVPNDLGNIFHLRYLSLRKTNVRCIPKSFGKLQNLETLDLRGTLVQELPIQICKLKKLRHLLVYYRDRIPRSNTIHGETGVRLNGSIGNLTSLQKLYHVEADHDGLNLITELRKLKQLRKLGLKNVRREFGNALCDSIQEMSCLESLSVSAIAQDETIDLQLISSLLQLRKLHLFGRLDMLPDWVTRLEYLVRLSIHFSKLKGDQLKSLKDLPNLMRLSIGRDAYVGESLHFEMGFQKLKRLYLTDLNEVNSIVIDNGALPALERLLLRRLPQLKDMPSSFHLLKSLEILYLTDMPHEFNQSVDPEHGPKYWVIKHVQLVSIREQFGPNIRDYNHRTIHHPRDI* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4243 937 Pfam NB-ARC domain 175 423 IPR002182 GO:0043531
Lja3g4243 937 PANTHER DISEASE RESISTANCE PROTEIN RP 31 894 IPR044974 GO:0006952
Lja3g4243 937 Pfam Rx N-terminal domain 5 92 IPR041118 -
Lja3g4243 937 Gene3D Ribonuclease Inhibitor 541 904 IPR032675 -
Lja3g4243 937 Gene3D - 332 420 IPR042197 -
Lja3g4243 937 Gene3D - 155 325 IPR027417 -
Lja3g4243 937 PRINTS Disease resistance protein signature 369 383 - -
Lja3g4243 937 PRINTS Disease resistance protein signature 623 639 - -
Lja3g4243 937 PRINTS Disease resistance protein signature 270 284 - -
Lja3g4243 937 PRINTS Disease resistance protein signature 190 205 - -
Lja3g4243 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 435 IPR027417 -
Lja3g4243 937 PANTHER - 31 894 - -
Lja3g4243 937 Gene3D - 4 117 - -
Lja3g4243 937 SUPERFAMILY L domain-like 499 895 - -
Lja3g4243 937 CDD RX-CC_like 2 132 IPR038005 -
Lja3g4243 937 Gene3D - 421 511 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4243 Lja-Chr3 82341865 82347241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4243 190 388 WRKY Transcription Factor Family AT5G45050 29.000 7.20e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4243 K13457 - gmx:100801561 1006.13