Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4238 ATGATGCAGCGTGGATGGAGTTATGATGTGTTTCTGAGTTTCAGAGGTGAAGACACCAGGAGAACCTTCACAGGCTCTCTTTATCATGGTTTGCGCCAAAGGGGTATCAATGTTTTCATAGATGATGAGGAGCTTAGGAGAGGAGAAGAGATATCCCTAGCTCTTCTTCAAGCAATTGAAGAATCCAGAATTTCCATCATTGTGTTTTCTGAAAACTATGCAAATTTCAAATGGTGCCTTGACGAGCTTGTTAAGATCCTTGAGTGTTGGAAAACAAAGGGGCAATTGGTTTGGCCAGTTTTCTACCATGTTGACCCTTCCTCGGTACGGCATCAGAGAGAAAGTTTTGGTACTGCAATGGCTGAACATGAAGTCAGGTTCAAGGCTGATTTGGGAAAGTTGCAAAAGTGGAAAGAAGCTTTGTTTGATGCAGCCAATTTGTCAGGTTGGAGCTTAAATAATGGGTATGAATTTGAGCTTATCCAAAGGATCATTGAAGAGGTCTCTAACAAATTAAATCACACCCTTTTGCATATTGCTGAATACCCAATTGGACTAGAGACTCGCATATCAGAAGTGAAGTCACTTTTGCACATTGAACCTGGTGAAGATATTCTTGTCATTGGAATCCATGGACTTGGAGGAATTGGCAAAACAACAACAGCAAGGGCTTTATACAACTCCATTGCTGATGAGTTTGAAGTTGCAAGTTTCCTTGCTGATATAAGAGAAACTTCAGACCAACGCCAAGGCTTGGTGCAACTTCAAGAAGCACTTCTTTTTGATACTGTCGGGGACAAGAACATTAAGCTGGGGTATGTTTATAAAGGAATCCCCATTATAAAGAAAAGGTTATGTCGCAAGAAAGTGCTTTTGATTCTTGATGATGTTGACAAATTGGAGCAGCTGCAAGCATTGGCCGGAGGGCGTGATTGGTTTGGTCTTGGCAGTGTGATAATCATAACAACAAGAGATAAGCACTTGCTAGCTGCTCATCAAGTTGACAAAACATATGAAATAAAGAAACTAAACCATGCTGAAGCTTTTGAGCTTTTTACATGGAATGCTTTCAAAAGGACAGCACCTGATGAGGGCTACATGGAGATTTCAAACCGGGTGGTGCTCTATGCTGAGGGACATCCATTGGCTTTGAAAGTAATGGGGTGTAATTTGTTTGGTAAAACAGTGGAACAATGGAAATCTGCTCTGGACAAATATGAAAAAATTCCCAATAAAGAGGTTCAGAGTGTGCTTAGAGTAACCTATGATAATCTAGAAGAGAATGAGAAGGAAATTTTCTTGGATATTGCATGTTTCTTCAAGGGGGAGACAATGGAATATGTTGAAAAGACACTGCAAGCTTGTGGTTTCTATCCAAAATTTGGTGTTAGTGTACTTATTGATAGATCTCTTGTAAGTGTTGATGAATATAGCAGATTGAGAATGCATGATCTGATACAAGACATGGGTAGAGAAATTGTTAGAGAAGATTCCCCATTAGAGCCTGGAAAGCGGAGTAGACTATGGTATCATGAAGATGTTTTTGAAGTACTCACTGAAAATACGGGGACTTATAAAATTCAAGGCATGATGGTGGACCTCCCTGATCAATATATGGTACACTTGGAAGGTGATTCCTTCAAAAGGATGAAAAATCTAAAAATTCTTATCGTTCGAAATGGACACTTTTATGGAAGCCCCCAACATCTTCCAAACAATTTAAGGTTGCTTGACTGGATGGAATATCCTTCATCATCTTTACCATCAAGTTTTCTTCCAAAGAAACTAGTAGTACTCAACTTGTCTCGTAGTCGTTTCACAATGCAGGAGCCATTCAAGTATTTGGATTCTTTGACCTCGATGGATTTGAGTCACTGTGAGTTCTTAACAAAGCTACCTGACATTTCTGGTGTCCCAAATTTAACAGAACTGAATCTTGACTTTTGTACAAATTTAGCAGAAGTTCATGATTCTGTTGGATTCCTAGACAAACTTGTTGAGTTGAGGGCTTATGGATGCACCAAACTTGAGGTTTTCCCAAGTTCCATCAGGTTGACATCACTGAGAAGTCTTATTCTTAATTGGTGCTCAAGTCTTCAAAGTTTCCCAACAATTTTGGGAAAAATGGACAATCTCATATCCGTTTCTATTGAAGGTACTGGTATAAAAGAATTGCCTCCTTCCATTGGAAATCTTGTTGGGCTTGAAGAATTAAGCATGACATCTTGCTCAAGTCTCAAGGAACTTCCTGACAACATTGATATGTTACAAAATCTTAGAAACCTTGACATTGAAGGCTGTCCAAGTTTTTTGACAAAATTGAGAGAATTGGGACACTCTACCCTTACCTTTGGTAACATTCAGTCTCTGAATCTAGAAAACTGTGGCCTTATAGATGAGGATCTTCCCATAATTTTCAGTTGTTTCCCAAAGTTAGCATCATTAGTTCTTTCAGGAAATAATTTTACAGCTCTTCCAAGCTGCATGGCAGAATTTCCTGGCTTGGAATTACTTCACTTGGACAACTGCAAACAACTCCAAGAAATTCCAGGCATTCCTCCCAATTTACAATACATTAATGCAAGAAACTGCATATCATTGACAGCAGAGTCATCAAATTTGTTACTAAGCCAGGAAATTTTTGAGGCATGTCAGTTACAAGTTATGGTCCCTGGAACACGAATTCCAGAATGGTTTGATCACATCACCAAAGGAGAATATATGACCTTTTGGGTAGGCCAAAATTTTCCAGCACTGATAATATGCTTTGTTCTTGCAATAGAGAGTGAAATGAAGAAGAGCTTCAATTGCGAAATCCGCTTTTATATAAACAGTGAAGAAGTTTATGAGTTGGAAATGCCAAGATGCTTTTCAGGAATGGTGACAGATCATGTATGGGTGTATGACTTAAGAACTCATCCATCCATCCAGAGGCATCATCTTGATTCATATTTAGTGGAAGGTTGGAATCAGGTGGAGATTTCATGTGAGAAAATAAGTGGAGCATCAAATGTGACTGTGAGCTTGTGTGGAGTTCATGTGTGTAAGGATGAAGCTAACATGAAGGATATCCTATTTAAAGATCCTGATCCTGATTCAGACTTAAGCAGAGACTCTGAGGAGATCAGTACTGATTTGGTCACAACCAATGAAGAAAGCACAAAGTCAATTGAAGATTTCCAATACTGCAAGAGATTAGATGATAGCTGCCATAATAATTTCAATAATTTGGAAGTTTGGTGTGAGACACAGGATAGTGTTGCTGAAGATTCAATTGCTTCAGTAGTCAGTTCAGAGTGTCCGGGGGGCACAGATAGTGTCAAAGAGTGTGGATCCAACTTTGTACCTACTAATCATCCAGCTAAAGCTCAACCAAAACCCCAAGTCACAAGTTTTATACAAACGCCAAGTGTCAAGGAATCAAATACTGCTATTGACATTTTAACAACCAGTTTAACAATAGATGATTTGGACATGGAGGCATTTTATGCTAATCTGGATGCTGAGACCACAGTTCCTTCACCTCTCAATGACACCAGAATGGTTCCGGAATTGTCCAACAGAATGCCACCAAGTGAAGAGACCCAGGAAGCATTGAAGACACTTCAAGACTTTCTCACCAAAGACCTTTCTGTTCTGTTGGAACCTCATCAGCACACTACCATGAAAGCTACCTTAGACTATCTCACCAATTTACCAGCACAAGAAGGAATACCAGTGGACACAAGGTCACTGATAATAGAGGTTTCAAGACAGTTCACTTGTTGGAGTTTGGATTACACAGAAGAAAGTAGGAAAATAGAGTCTACAACAGCCAAATTGCTGAAAGCTGATGAACTTAAAGAAGGTCTTGAAGCTAACAAGAACTGTTTCAGGGAAGTCATGTACTTGGAAAATGAGTTGTGCAATGAGTTGGCCTATTTGGAGGAAAGAAAGAAGGAGCTAGAAGAACTGATAAATACTGTCAAAGCTAACATCTCTGCTTCACAAGAGGCCAGGAACATGGCTGTTCATACAAAGAGAGAAATCTTTGGGGAAGCAAGGATTTTAAAAGCTCAAAGAGATGAGTTAGGGGAACATGTACCAGGATTGAGATATGAGCAGGAATTGGCAAAGAAAATTCAGTCAAATATCAGAGCTGAATGGTTAAAGCTTGGAGAAAAAGTTAACAACAGCTTAAGGTATAAACTATAA 4194 0.3929 MMQRGWSYDVFLSFRGEDTRRTFTGSLYHGLRQRGINVFIDDEELRRGEEISLALLQAIEESRISIIVFSENYANFKWCLDELVKILECWKTKGQLVWPVFYHVDPSSVRHQRESFGTAMAEHEVRFKADLGKLQKWKEALFDAANLSGWSLNNGYEFELIQRIIEEVSNKLNHTLLHIAEYPIGLETRISEVKSLLHIEPGEDILVIGIHGLGGIGKTTTARALYNSIADEFEVASFLADIRETSDQRQGLVQLQEALLFDTVGDKNIKLGYVYKGIPIIKKRLCRKKVLLILDDVDKLEQLQALAGGRDWFGLGSVIIITTRDKHLLAAHQVDKTYEIKKLNHAEAFELFTWNAFKRTAPDEGYMEISNRVVLYAEGHPLALKVMGCNLFGKTVEQWKSALDKYEKIPNKEVQSVLRVTYDNLEENEKEIFLDIACFFKGETMEYVEKTLQACGFYPKFGVSVLIDRSLVSVDEYSRLRMHDLIQDMGREIVREDSPLEPGKRSRLWYHEDVFEVLTENTGTYKIQGMMVDLPDQYMVHLEGDSFKRMKNLKILIVRNGHFYGSPQHLPNNLRLLDWMEYPSSSLPSSFLPKKLVVLNLSRSRFTMQEPFKYLDSLTSMDLSHCEFLTKLPDISGVPNLTELNLDFCTNLAEVHDSVGFLDKLVELRAYGCTKLEVFPSSIRLTSLRSLILNWCSSLQSFPTILGKMDNLISVSIEGTGIKELPPSIGNLVGLEELSMTSCSSLKELPDNIDMLQNLRNLDIEGCPSFLTKLRELGHSTLTFGNIQSLNLENCGLIDEDLPIIFSCFPKLASLVLSGNNFTALPSCMAEFPGLELLHLDNCKQLQEIPGIPPNLQYINARNCISLTAESSNLLLSQEIFEACQLQVMVPGTRIPEWFDHITKGEYMTFWVGQNFPALIICFVLAIESEMKKSFNCEIRFYINSEEVYELEMPRCFSGMVTDHVWVYDLRTHPSIQRHHLDSYLVEGWNQVEISCEKISGASNVTVSLCGVHVCKDEANMKDILFKDPDPDSDLSRDSEEISTDLVTTNEESTKSIEDFQYCKRLDDSCHNNFNNLEVWCETQDSVAEDSIASVVSSECPGGTDSVKECGSNFVPTNHPAKAQPKPQVTSFIQTPSVKESNTAIDILTTSLTIDDLDMEAFYANLDAETTVPSPLNDTRMVPELSNRMPPSEETQEALKTLQDFLTKDLSVLLEPHQHTTMKATLDYLTNLPAQEGIPVDTRSLIIEVSRQFTCWSLDYTEESRKIESTTAKLLKADELKEGLEANKNCFREVMYLENELCNELAYLEERKKELEELINTVKANISASQEARNMAVHTKREIFGEARILKAQRDELGEHVPGLRYEQELAKKIQSNIRAEWLKLGEKVNNSLRYKL* 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4238 1397 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 1064 IPR044974 GO:0006952
Lja3g4238 1397 Coils Coil 1298 1332 - -
Lja3g4238 1397 SUPERFAMILY "Winged helix" DNA-binding domain 413 518 IPR036390 -
Lja3g4238 1397 MobiDBLite consensus disorder prediction 1027 1041 - -
Lja3g4238 1397 Gene3D - 2 171 IPR035897 -
Lja3g4238 1397 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Lja3g4238 1397 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 1064 - -
Lja3g4238 1397 SMART till_3 7 147 IPR000157 GO:0007165
Lja3g4238 1397 Pfam TIR domain 8 176 IPR000157 GO:0007165
Lja3g4238 1397 Gene3D Ribonuclease Inhibitor 518 697 IPR032675 -
Lja3g4238 1397 Gene3D - 342 426 IPR042197 -
Lja3g4238 1397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 436 IPR027417 -
Lja3g4238 1397 Gene3D - 172 338 IPR027417 -
Lja3g4238 1397 SUPERFAMILY L domain-like 530 875 - -
Lja3g4238 1397 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Lja3g4238 1397 Gene3D Ribonuclease Inhibitor 698 904 IPR032675 -
Lja3g4238 1397 Pfam NB-ARC domain 187 424 IPR002182 GO:0043531
Lja3g4238 1397 PRINTS Disease resistance protein signature 284 298 - -
Lja3g4238 1397 PRINTS Disease resistance protein signature 613 629 - -
Lja3g4238 1397 PRINTS Disease resistance protein signature 377 391 - -
Lja3g4238 1397 PRINTS Disease resistance protein signature 207 222 - -
Lja3g4238 1397 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1164 1368 IPR044974 GO:0006952
Lja3g4238 1397 Coils Coil 1267 1287 - -
Lja3g4238 1397 MobiDBLite consensus disorder prediction 1027 1050 - -
Lja3g4238 1397 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1164 1368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4238 Lja-Chr3 82216812 82222781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4238 8 770 WRKY Transcription Factor Family AT4G12020 31.195 2.60e-92 328