Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4230 ATGTCCACGGCGGTTGCGCCATCTTCCGTCACCATCACCGCCACCGGCGTCGGTCTTGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCACCATCATGCTCGCCTCCTACGCCTGCGTCCGCATCAAGGCCCACGGCCGCCGCAGTAGCTCCTACTACTACAGCAGCGACCGTGAGATCACGGACTCTACCGGGCCCAGACCTGTGATCCTGGGCCTGGAAAAGCCCGTGATCGAAGCCTATCCGAAGATTGTTATTGGGGAGAGCAGGCGGTTGCCACAGCCCAATGAAGGCACGTGCGCCATCTGCTTATCTGAGTATCTTCCGAAGGAGACGATACGGTGCGTTCCGGACTGCCATCATTGCTTCCACGCCGAGTGTGTCGATGAGTGGCTCCGTGTGAGTGCCACGTGTCCCATGTGTCGGAACTCTCCGGCTCCGTCGCCGGTGGCTACGCCGTTGTCGGAGCTGGTTCCTCTGGCTTTTCACGCCAGGTGA 510 0.6098 MSTAVAPSSVTITATGVGLGYGIAIAVSILVLISTIMLASYACVRIKAHGRRSSSYYYSSDREITDSTGPRPVILGLEKPVIEAYPKIVIGESRRLPQPNEGTCAICLSEYLPKETIRCVPDCHHCFHAECVDEWLRVSATCPMCRNSPAPSPVATPLSELVPLAFHAR* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4230 169 Pfam Ring finger domain 103 146 IPR001841 -
Lja3g4230 169 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lja3g4230 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 151 IPR013083 -
Lja3g4230 169 CDD RING-H2_EL5_like 103 146 - -
Lja3g4230 169 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 152 - -
Lja3g4230 169 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 19 152 - -
Lja3g4230 169 SMART ring_2 104 145 IPR001841 -
Lja3g4230 169 SUPERFAMILY RING/U-box 95 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4230 Lja-Chr3 82142451 82142960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4230 8 169 C3H Transcription Factor Family AT5G07040 62.346 1.48e-69 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4230 - - lja:Lj3g3v0787250.1 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4230 3 82142451 82142960 Lja3g4230 3 82142451 82142960 ECH