Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4228 ATGGCATCAAGCTCAATGTCATCCTATGGCTCATGGAATGCTAAGGACAATAAAGCCTTTGAAAGGGCTCTAGCTGTTTATGACAAGGAAACCCCGGACAGATGGTACAATGTTGCTCAAGCTGTTGGTGGGAAGACCCCAGAGGAAGTGAAGAGGCACTATGAGCTTCTCCTTAGGGATGTTAGGCACATTGAATCAGGGCATGTTCCATTCCCAAACTACAAGAACACTGGAGGGTCAGAACAGGAGAAAAGGCTGAAAAACCTGAAGCTTCATTGA 279 0.4624 MASSSMSSYGSWNAKDNKAFERALAVYDKETPDRWYNVAQAVGGKTPEEVKRHYELLLRDVRHIESGHVPFPNYKNTGGSEQEKRLKNLKLH* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4228 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 91 IPR044636 GO:0003700
Lja3g4228 92 SMART sant 8 60 IPR001005 -
Lja3g4228 92 Gene3D - 2 71 - -
Lja3g4228 92 MobiDBLite consensus disorder prediction 68 92 - -
Lja3g4228 92 CDD SANT 12 58 IPR001005 -
Lja3g4228 92 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Lja3g4228 92 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Lja3g4228 92 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 91 - -
Lja3g4228 92 SUPERFAMILY Homeodomain-like 11 64 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4228 Lja-Chr3 82118940 82119680 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g4228 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4228 - - gmx:100804396 154.451