Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4226 ATGACTAGGAAGAAGGTGAAACTTCAATATATCTTTGATGAGCCGGCAAGGAAAGCAACTTACAGGAAGAGGAAGAAGGGTATCATAAAGAAGGTTAATGAACTCACCACTCTTTGTGGGCCAGAGATTTGGCCAAATCCAGAGGGAGCCAAGAATGTGATCGAAAGGTATCAACATACAGCTTTGAAAGATGACCGTAAGAATGTGGACCAAGAGAGGTTCATCGTTCAAATGATTTCCAAATCCCAAGACCAAATGGTTAAGGTGTGTCATCAGAATCGTCAAAAGGAGTTGACCATGGAAATGTTCAAGTATATGCATGAAGAAGCCTTGCCAGAAAATCTGACTGCTGAATATTTGAATGATCTCAATAGGCTGATTGAGGAGAAAATGAATGAGGTCGATACTCAGCTCGCTAAGCGCGAATGA 429 0.4149 MTRKKVKLQYIFDEPARKATYRKRKKGIIKKVNELTTLCGPEIWPNPEGAKNVIERYQHTALKDDRKNVDQERFIVQMISKSQDQMVKVCHQNRQKELTMEMFKYMHEEALPENLTAEYLNDLNRLIEEKMNEVDTQLAKRE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4226 142 Gene3D - 13 44 IPR036879 GO:0003677|GO:0046983
Lja3g4226 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 43 IPR002100 GO:0003677|GO:0046983
Lja3g4226 142 SUPERFAMILY SRF-like 1 66 IPR036879 GO:0003677|GO:0046983
Lja3g4226 142 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja3g4226 142 Coils Coil 120 140 - -
Lja3g4226 142 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja3g4226 142 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja3g4226 142 PANTHER MADS BOX PROTEIN 2 139 - -
Lja3g4226 142 ProSiteProfiles MADS-box domain profile. 1 43 IPR002100 GO:0003677|GO:0046983
Lja3g4226 142 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4226 Lja-Chr3 82107730 82108200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4226 1 134 Type I MADS-box Gene Family AT3G05860 36.913 4.04e-23 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja3g4226 SRF-TF 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4226 - - gmx:100792290 151.754