Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4223 ATGGCCTCTTCTTCGAGTTCACCATGTGCAGCATGCAAGTTTCTGCGGAGGAAGTGTCAACCGGAGTGCGTGTTTGCGCCATACTTCCCACCTGATCAGCCGCACAAGTTTGCAAGTGTTCACAGAATCTTCGGTGCCAGCAATGTCTCCAAGCTTCTCAATGAGTTGCAACCCCACCAGCGTGAAGATGCTGTGAACTCCCTCGCCTATGAAGCTCATATGCGCCTCCGTGACCCTATCAATGGCTGTGTAGGAGTCATCTCCATCCTTCACCACCAGCTCCGCAAGCTCCAAATGGACCTTCTCCTCGCCAAAAATGAGCTCTCTAAAATCCAAAACTTTGGCTTGGCAATGGCAGGCCAAAATCTTGCTGCTACTACAGCCGCAGCTGCAGCAGCCAACATGGCCGCCACTGCTGCTGCCACTACCATCCCTCAGCATATGACAAACATGAGCGGCGGTGGGATTGGTGGCAGTGGTTGGGATAACTACCTACATTATCATCATCATCGCCATCAGTTTTTTCCAAGGGATGTAGTTAGTAACTTTGATTCAGGGAGCAGCTATGAGGCTAATCCCTTGGCCATTAACAACACCTCTCAACAACTTTCCAGTTTTGTGCAACTAAATCAGCTTCAGCTTCCTAGTGCTGCTGCGTCGGTTGATAACCGTCTCACTACTGTCCATCCCTCTTTAGGGTTTATGGAGGCAAGACATAATTAA 723 0.4979 MASSSSSPCAACKFLRRKCQPECVFAPYFPPDQPHKFASVHRIFGASNVSKLLNELQPHQREDAVNSLAYEAHMRLRDPINGCVGVISILHHQLRKLQMDLLLAKNELSKIQNFGLAMAGQNLAATTAAAAAANMAATAAATTIPQHMTNMSGGGIGGSGWDNYLHYHHHRHQFFPRDVVSNFDSGSSYEANPLAINNTSQQLSSFVQLNQLQLPSAAASVDNRLTTVHPSLGFMEARHN* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4223 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 179 - -
Lja3g4223 240 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Lja3g4223 240 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Lja3g4223 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4223 Lja-Chr3 82088982 82090203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4223 1 231 AS2 family AT1G65620 55.319 2.28e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja3g4223 LOB 1.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4223 - - gmx:100819502 251.136