Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4219 ATGTCTACTGCAAGGACTGTCAAGGACGTTTCTCCACATGAGTTCGTCAAGGCCTACGCTGCTCATCTCAAGCGATCTGGCAAGATGGAGCTTCCAGAGTGGACCGATATCGTGAAGACTGCTAGGTTTAAAGAGTTGGCTCCTTATGATCCTGACTGGTACTATATTAGAGCTGCTTCCATGGCAAGAAAGATCTATTTGAGAGGTGGACTTGGTGTTGGTGCATTCCAGAGGATTTATGGTGGGAGCCAGAGGAATGGTAGCCGCCCTCCCCATTTCTGCAAGAGCAGTGGTTCTATTGCTCGTCACATTCTTCAACAGTTGCAGACCATGCACATCATTGAACTTGACAACAAGGGTGGGAGGAAAATCACTTCCAGCGGCCGTCGAGATCTGGACCAAGTGGCTGGACGGATTGTGGTTGTTGCTCCTTGA 435 0.4943 MSTARTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIARHILQQLQTMHIIELDNKGGRKITSSGRRDLDQVAGRIVVVAP* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4219 144 Gene3D - 1 142 IPR036388 -
Lja3g4219 144 PANTHER 40S RIBOSOMAL PROTEIN S19 3 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lja3g4219 144 PANTHER 40S RIBOSOMAL PROTEIN S19-3 3 141 - -
Lja3g4219 144 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lja3g4219 144 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lja3g4219 144 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lja3g4219 144 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4219 Lja-Chr3 82034337 82036375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4219 1 139 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 87.050 1.97e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4219 K02966 - gmx:100499800 274.633