Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4211 ATGCCAGTCATGGCTTTCAACCCTGAGCAAATGGAAAAACAACAAGAAGAAAAACCTCACAGAATCATCGAAGAAGAAGAAGAAGATGATGATGATGACATCGAAGAAGAAGAAGCAGATGAAGAGTGGGGTGACTGGGAAGGAGACGAAGAAGAAGGAGAATCCCAATCTGAATTCCTCTGTCTGTTCTGTGATTCCACTTTCACTTCCTCCGCTTCCTTGTTCCACCACTGCGCTTCCCTTCACCACTTCGATTTCCATGCCATTACCAAACTTCTCAACTTGGATTTCTATGCTTCCTTCAAGCTCATCAACTACATTCGCTCTCAGGTGGCAGAGAGCAGATGTTGGAGCTGTGGATTAACTTTTCAGACGAACCGTGACTTGCAGAATCATTTGCACGACTTAAATGATATTAAGACTCTGTGGGATGATGATAGATATTTAAAACCTTTCATGCAAGATGATTCACTGCTGTACAGCTTTGATGAAGGTGAAGGTGAAGGTGAAGAAGATGAACAAATTCCACTGATTGATGAAGATCTTATGAGAGATTTGAAGAATGCTGAAGAAATTTTTGGGGATGATCATAGTGCTTTTGAAAAGCTGGTGGTCAAAGATGATGTTTGTAGAATAAAGGATACTGCTTCTGTTTCTGATGATCATTCAAACCGGGCCAGTTCTTCAGATAAGGAACTTAGTAATGGTAAGGGCTCAGGAGGATATGTTTCTCTGATTGATAAGAATCCAGAAGATGGGCATTTGATGGCTAATTCTCAAAATCACATTGCAAAGCACATTAAGAAGGTTAATGAAAATTATTTTGGGGCTTACAGTTCATTTGGCATCCATCGTGAGATGCTAAGTGATAAGGTGAGAATGGATGCTTATGGCCAAGCAATTTTGAAGAATCCTTCTCTACTAAATGGTGCTGTTGTCATGGATGTAGGTTGTGGAACTGGCATTCTCAGCCTATTTGCGGCTCAAGCAGGGGCTTCAAGGGTTATTGCAGTTGAGGCTAGTGCCAAGATGGCAGCAGTGGCATCTCAGGTTGCAAAAGACAATGGTCTCTGGCTGAGTAAAAGCCAAAGTGGAGTCAATGGCCTCCAAAAAGGAGTCATAGAAGTGGTTAATTGCATGGTTGAAGAGATTGACAAAACCGTTGAACTTCAACCTCACAGTGTTGATGTATTGTTAAGTGAATGGATGGGATATTGCCTGCTGTATGAATCCATGCTTGGTTCAGTGCTCTATGCACGCGACCGGTGGTTGAAGCCTGGAGGTGCTATTCTTCCTGACACTGCAACTATTTTTGTCGCAGGATTTGGAAAAGGAGGTACAAGTCTTCCATTTTGGGAAAATGTGTATGATTTTGACATGTCTTCCATTGGGAAGGAGCTCGTCATAGATGCTGCCCAATTTCCTATAGTTGATGTTGTTGACTATCAAGATTTAGTTACCAGTTCTGCCGTTCTTCAGACCTTTGACTTGGCTACCATGAAGCCAAATGAAGTGGATTTCACTGCCACTGCTACTTTGGAACCAAAATTGAGTGCTTCAGACAACGAAAAAACACATTTCGATTCTAAAACATGCTGCTGGTGTTACGGTGTTGTCCTATGGTTTGACACTGGGTTTTCAAGTAGATTCTGCCGGGAGACACCAGCTGTGTTATCCACATCCCCTTACACTCCAAAAACACATTGGTCACAAACAATCTTGACATTCCGGGAACCCATTGCCATGGGGTCTGGAAAAGAAAATGGAAGAAAACCGGCAGCAATTGGCACTGAAGCATATCCTGCTGTGAAGATTGATTTGCGGGTCAGCATTGCCCGTTCCACGGAGCATCGTAGCATTGACATTTCCATGGAAGCTGCTGGTGTTGGTCCTGATGGTCAGAGACGCTGTTGGCCTGCACAACTTTTTTCTCTGCAGTAA 1941 0.4307 MPVMAFNPEQMEKQQEEKPHRIIEEEEEDDDDDIEEEEADEEWGDWEGDEEEGESQSEFLCLFCDSTFTSSASLFHHCASLHHFDFHAITKLLNLDFYASFKLINYIRSQVAESRCWSCGLTFQTNRDLQNHLHDLNDIKTLWDDDRYLKPFMQDDSLLYSFDEGEGEGEEDEQIPLIDEDLMRDLKNAEEIFGDDHSAFEKLVVKDDVCRIKDTASVSDDHSNRASSSDKELSNGKGSGGYVSLIDKNPEDGHLMANSQNHIAKHIKKVNENYFGAYSSFGIHREMLSDKVRMDAYGQAILKNPSLLNGAVVMDVGCGTGILSLFAAQAGASRVIAVEASAKMAAVASQVAKDNGLWLSKSQSGVNGLQKGVIEVVNCMVEEIDKTVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGGTSLPFWENVYDFDMSSIGKELVIDAAQFPIVDVVDYQDLVTSSAVLQTFDLATMKPNEVDFTATATLEPKLSASDNEKTHFDSKTCCWCYGVVLWFDTGFSSRFCRETPAVLSTSPYTPKTHWSQTILTFREPIAMGSGKENGRKPAAIGTEAYPAVKIDLRVSIARSTEHRSIDISMEAAGVGPDGQRRCWPAQLFSLQ* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4211 646 SUPERFAMILY beta-beta-alpha zinc fingers 39 174 IPR036236 -
Lja3g4211 646 Pfam Methyltransferase domain 313 428 IPR041698 -
Lja3g4211 646 CDD AdoMet_MTases 313 431 - -
Lja3g4211 646 Gene3D Vaccinia Virus protein VP39 263 432 IPR029063 -
Lja3g4211 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 31 644 IPR025799 GO:0016274|GO:0018216
Lja3g4211 646 MobiDBLite consensus disorder prediction 1 50 - -
Lja3g4211 646 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 278 586 IPR029063 -
Lja3g4211 646 Pfam C2H2 type zinc-finger (2 copies) 61 139 IPR041661 -
Lja3g4211 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 31 644 - -
Lja3g4211 646 MobiDBLite consensus disorder prediction 217 241 - -
Lja3g4211 646 Gene3D - 435 637 - -
Lja3g4211 646 MobiDBLite consensus disorder prediction 23 50 - -
Lja3g4211 646 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 271 598 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4211 Lja-Chr3 81958844 81962709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4211 32 645 C2H2 Transcription Factor Family AT3G12270 56.693 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g4211 Methyltransf_25 7.6e-09 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4211 K11436 - gmx:100781879 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4211 3 81958844 81962709 Lja3g4211 3 81958844 81962709 ECH