Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4209 ATGTGGAGTAGAGCCAGCGTTGATGCCGAGTTCGATTCACAACAATTACCTAGTTCCAATGCATACTTTACCGAAGGAAGCATGATCGATTCTTTTCGTGTGTCTGACTTTGATCAATCAGTTGGATATCGCATTGAGGATGCTGTTGACTTGAGTGGAAACTCAGCTTTTAACCCCTTAAAAGTAAGTAACCAGACAATTTCTCGTGTTCACATCGGTACTTTTGATAAGTTGCCAATTTCACTTGATAAAAGCCCATTGACAAACCAAACAGAGCAAGAGGGCTTGCAATTGCAAAAGATTCAATCATCCAATCTGGTCACATTATTAAGTGGTAATACAGAAAATCAGGAAGAGTCTGCCATGGCTGATGCCAGCCCTAGAACTGATATTTCAACAGATGGTGACACTGATGATAAGAATCAGCGGTTTGATAGAAGTTCCCTTGCTGTTGGAGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGAGTCTTCGTAGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGTTGACTCAACTGGAGCAAGAGCTTCAGAAAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAGGCACATTCAAACAGTGGAAATGGGGCCATGGCATTTGATGTTGAATACGCAAGGTGGCTGGAAGAGCAGAATCGGCTAATTAACGAGCTAAGAGCAGCTGTAAATTCTCATGCGAGTGACACAGAACTTCGCATGATTCTTGATGGTATAATGGCACATTATGATGAGATATTTAAGATGAAGATCGTTGCAGCTAAGGCTGATGTCTTCCATCTGTTGTCTGGCATGTGGAAAACACCAGCTGAAAGGTGTTTTCTATGGCTTGGTGGCTTTCGATCATCCGAACTCCTTAAGCTTCTGGTAAATCAATTGGAACCTCTCACAGAGCAGCAGCTAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCGCTGTCTCAAGGCATGGAAGCATTGCAACAGTCCCTTTCGGAGACATTGTCCACCGGATCACCTGGCTCCTCTGGTTCATCAGGAAATGTGGCAAATTACATGGGTCAAATGGCTATGGCAATGGGTAAGCTAGGGACACTCGAGGGGTTTATTCGGCAGGCTGACAATTTGCGCCAGCAGACGCTGCAACAAATTCACCGAATATTGACAACTCGCCAATCGGCCCGCGCACTCCTTGCCATCAATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCCCTCTGGCTTGCCCGCCCAAGAGATTGA 1359 0.4503 MWSRASVDAEFDSQQLPSSNAYFTEGSMIDSFRVSDFDQSVGYRIEDAVDLSGNSAFNPLKVSNQTISRVHIGTFDKLPISLDKSPLTNQTEQEGLQLQKIQSSNLVTLLSGNTENQEESAMADASPRTDISTDGDTDDKNQRFDRSSLAVGASDSSDRSKDKTDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQKARQQGIFISNSGDQAHSNSGNGAMAFDVEYARWLEEQNRLINELRAAVNSHASDTELRMILDGIMAHYDEIFKMKIVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSPGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQIHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4209 452 PANTHER TRANSCRIPTION FACTOR TGA9 51 452 - -
Lja3g4209 452 Pfam bZIP transcription factor 167 209 IPR004827 GO:0003700|GO:0006355
Lja3g4209 452 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 51 452 - -
Lja3g4209 452 Gene3D - 166 218 - -
Lja3g4209 452 Coils Coil 243 263 - -
Lja3g4209 452 Coils Coil 186 213 - -
Lja3g4209 452 Pfam Seed dormancy control 250 324 IPR025422 GO:0006351|GO:0043565
Lja3g4209 452 SUPERFAMILY Leucine zipper domain 167 210 IPR046347 GO:0003700|GO:0006355
Lja3g4209 452 MobiDBLite consensus disorder prediction 114 169 - -
Lja3g4209 452 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 165 209 IPR004827 GO:0003700|GO:0006355
Lja3g4209 452 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 170 185 IPR004827 GO:0003700|GO:0006355
Lja3g4209 452 MobiDBLite consensus disorder prediction 131 145 - -
Lja3g4209 452 SMART brlzneu 163 226 IPR004827 GO:0003700|GO:0006355
Lja3g4209 452 ProSiteProfiles DOG1 domain profile. 232 449 IPR025422 GO:0006351|GO:0043565
Lja3g4209 452 CDD bZIP_HBP1b-like 167 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4209 Lja-Chr3 81942812 81951281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4209 122 452 bZIP Transcription Factor Family AT3G12250 78.248 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g4209 DOG1 4.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4209 K14431 - gmx:100816123 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4209 3 81942812 81951281 Lja3g4209 3 81942812 81951281 ECH