Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4206 ATGCGGCCGGGCGGGGTGGGTGGATTTGTGCTGAATTTTCTTTCTTCTCCTTTTAACCGGTTACCGGAGTTGATCCATTCACAAATACAAGCATTATTTCAAAGATTAGAGCATTTTGCACAGCAAAAAGACATTCTTCATCTGAAAGAAGGTGTTTCCAGCATTGTTTGGCATGGAATTCCTACAAGTTCTGTGGTAGATGAGTCTGCTATTTATGGTAGGGATGATGACAAATGGATCCTTAAAGATTATTTGATGTCTGAAGATGCTAGTGCTAGTGGCAGTAAAATAGGAGTGATTTCCATTGTGGGCATGGGAGGGATTGGGAAGACAACTCTTGCTAAACTCCTTTACAATGATCATGAAGTTGAAGGGAATTTTGATCTAAAAGCGTGGGCCTACATTTCAAAGGATTTTGATGTTTGCAGGGTTACTAAAACTATTCTTGAATCTGTCACTTTTAAATCTGTTGATACAAATAACCTGAATATTCTTCAAGTGGAATTGCAGCAAAGCCTAAGGCATCAAAGATTCTTGCTTGTGTTGGATGACATTTGGGATGGGAGCTACGTTGATTGGAATAATCTAATGGATATTTTTAGTGCTGGGGAAATGGGAAGCAAAATCATCATCACAACACGAGATGAAAGTGTTGCAAAAGCTATGCAAACCTCTTTTCCTATCTACCATCTGACGTCTCTAGCCATTGAAGATTGCTGGTCTTTACTCGCCAAACACGCGTTTGGAGCAGATCGCTGCAACGAAAGGTCCAAACTCGAAGTGATTGGTCAAGAAATTGCGAAAAAGTGTGGTGGATTACCATTAGCTGCTATAGCACTTGGAGGTCTTCTACGCACCAAGTTATCACAAAATTACTGGAACAAGGTATTAAAAAGTAACATTTGGGATTTGCCCAATGTTAAGGTGCTACCAGCTCTGCTGTTGAGCTATCATCATCTACCTGCTCCTTTGAAACAGTGTTTTGCTTATTGTTCAATTTTCCCAAAGAACACCAAGTTAGAAAAAAAGATGTCCAAAGGTGAGGAAACTATGGAAGAAGTGGGTGATGAATACTTTGATGAACTAGTATCAAGGTCATTAATACACCGAGATGGGCAACCATACTTTAAAATGCATGACCTCATGAATGATTTAGCCACAATGGTTTCATCTTCATATTGTATCAGGTACGATGATCGAAAGTCACATGAAAGTGTTGAAAGAATTCGCCATTTGTCATACAACAAAGGCAAATATGACTCTTTCAATAAATTTGGTGACATTTATCAATCAAAATATCTTCGTACATTCATAGCCCTACCATTAAAGCTATGGTGGTTGCCAGAAAAATGTTTTGGATCCCATTACTTATCAAACAAGGTGGTACATGACTTGTTACCAGAAATGAGACAATTACGGGTGCTGTCCTTGTCACACTATTATAATATCACTGAGCTCCCTGACTCTCTTGGGAACTTGTTACATCTGCGATATTTGGACCTCTCTAACACTAAAATTCAAAGGTTGCCGAATGTGATATGCAAGCTCTACAATCTGCAGACCTTGTTGTTGTCCAAGTGTTGGTTCCTAACTGAGTTGCCTGAGGACATTGGAAATTTGGTTAATCTACAACACCTTAACATCCGGGGTACACACTTGAAGAAGATGCCCACACAGATAGCCAGGCTACAGAATCTTCAGACTTTGTCTGCCTTTGTGGTCAGCAAAGTGCAGGATGGCTTGAAGGTTGGGGAGCTAAGAAACTTTCCCCATCTGAAGGGGGAGCTTTCCATTTCAAAGCTACAAAATGTTACTGACCCCTTAGAAGCTTCCCAAGCCAATTTGAAGAAGAAAGAACTCATAGAAGTGTTAGCATTAGAATGGGATCATGGTACCACTGAAGACACGCAAATCGTAAGGCTTGTGCTTGATCAGCTGCAGCCTCCCACAAATTTGAAGAAACTAACCATCCAATGCTATGGGGGAACCAGCTTTCCAAATTGGTTGGGTGATTCCTCATTTGCTAACATGGTGTACTTGTGCATTAGAGATTGTGATCATTGTTGGTCACTGCCACCCCTTGGACAATTACTCAGTCTCAGAGAACTATACATTTCGGGGATGAAATCAATTAAGACTGTTGGTACTGAATTCTATGGAAGTGGTTCCAGTTCTTTTCAACCATTTCCCTCCTTGGAAGTTCTGAGCCTTAAGGAGATGCCAGAGTGGGAGGAATGGAACTTGATTGGAGGTACAGCTATTGAGTTTCCTAGTCTAAGATGCCTGTCACTGGAAAATTGTCCAAAACTTAAAGGAACCTTGCCCACCAAACTTCCTTCTTTAACTTTTGAGTTATCTGGCTGTCCACTATTATTTCCCATTGCAATGGTCTGTCCCAAACCCATTGAAAACACATCAACCAACCTTCCTGGCTCAATTGTGCTCAAGTGCACCAATTTCATCCTAGACTTAACAATCTCAAGCATTCCCTCACCAGCATCTCTTCCAAGAGATGGCCTTCCAACAACATTGCGATCTCTCACTTTACGTGATTGTGAGAATCTGCAATTCCTCCCTCATGAGTCCTTGCACAATTACACATCACTTGAGAATTTGACAGTACATAATAGCTGTAGTTCAATGACTTCCTTTACCTTGGGTTCTCTCCCTGTACTCAAAAGTCTTAGCATCAGAGGTTGTAAGCAACTGCAATCCATTGCCATTGCAGAAAATGCTTCTTCCCACAGTCTCTTGCTTCTTGAGTGGTTGAGCATACATTGTTGTCCTGAACTAGAGTCATTTCCCACGCGTGGATTGCCCACTCCTAACCTATATCATCTGGATTATTTTGCAAAAGAAGGTTTGCCTGTCAATTTACGAGGTTTAGCTGTCTGCAGTCCTAGGAGTTTCTGGACAGAAACTATCAGTGAGTGGGGTTTGCAACGGCTCACTTGTCTTGCAGCGTTGCGTATCGGAGGTGATAATCTTTTGAATGTGCTTATGAAAATTCAAGTGCCAGTGTTGCCCACTTCTCTTGTGTCCCTAGTAATCTGTAATCTTCATGATGTAAAATGCTTGGGTGGGATTTGGCTTCAGCATCTCACATCCCTTGAAAAACTTGAGATTAGTTATTCTCCCAAACTCGAATCCTTGCCAGAAGAGGGACTTCCTTCCTCTCTTTCAGTACTGATCATCAGGCAATGCCCATTGCTAGAAGCAAGAACAATGGCCATGGCAGTTGTTGGAGAGGCATTCCTCTCAGCTTCCGTGGAGGTGTTGTTAGAGAGAATAGTTTCCCAAGAGTTCCTCTTCTTCTTCAGGAGCAAGCAGCTTGACGTTTCACTCCTGAAAAAGCTGAAAACAACTCTGCTGAGTCTTCAGGCTGTGCTGAATGATGCTGAGGAGAAACAGATCACCAACCCTGCTGTGAAGGAATGGCTGGATGAGCTCAGAGATGCTCTCTATGATGCTGATGATTTGTTGGATGAAGTCAACACTGAGGCTTTGAGGTGCAAACTGGAATCTGGGTCTCAAAGTAAAAGTCAACCCTTCAGTGATCAGGTTATGAACTTCCTTTCTTCTCCTTTCAAAAGTGCAAAAAGACATATCCTTGGACTGAAAGAAGGTGTTTCTGGCAGAGTCTGGCATGGAACACCTACTAGTTCTGTGGTTGATGAATCTGCTATTTATGGTAGAGATGATGACAAGAAGATACTTAAAGATTATTTGCTGTCTGAAGGTGATCATGGTTGTGGAAGCAAAATAGGGGTGATTACCATGGTTGGTATGGGTGGACTTGGTAAAACAACCCTTGCTAAACTCCTTTATAATGACCATGAAGTGGAGGAGAAATTTGATCTGAAAGCTTGGGCTTATATTTCAAAGGATTTTGATGTTTGCAGGGTGACTAAAAGCCTTCTTGAATCAGTCAGTTCAAAGCCTGTGGTTACAAATAACCTGAACATTATGCAAGTGGAATTGCAGCAAAGCTTAAGCAACAAAAGATTTTTGCTTGACATAGTCACTGAGTTGCCTGACTCTCTTGGAAACTTATTGCACCTGCGATATTTGAATCTCTCTAATACTAAAATTGAAAGATTACCAAATGCAGTATGCAAGCTCTACAATCTGCAGACCTTGTTATTGTCCAAATGCTGCTTACTTACTGAATTGCCTGAGGACATGGGAAATTTGGAGATGCCTGCACAAATATCCAAACTACAAAATCTCCAAACACTGTCTACTTTTGTTGTCAGCAAAAAGCAGGATGGATTGAAGGTTGGAGAGCTGAGGAAATTTCACCATCTACAAGGGAAACTTTCAATCTTAAAGCTACAAAATGTCACTGACCCCTCTGATGCCTTTCAATCCAACTTGAAGAAGATAGAACAAATTGATGAGTTGGCCTTAGAATGGGATCGCAATGCAACTGAAGACTCGCAAATGGAAAGGTGTGTACTTGAACAGCTCGAGCCATCAACAAACTTGAAGAAACTCACTATTCAGTTCTATGGTGGAACCAGTTTTCCAAATTGGTTAGGAGATTCCTCATTCGGAAACATGATGTATTTGCGTATCAGTGGCTGTGGTTATTGTTGGTCACTTCCTCCCCTAGGACAGTTACTTAGTCTCAAAGAACTCGTCATTTCTGGACTAAAAACTGTGAAGAGAGTCGGTACTGAATTCTATGGAAGTGGTTCCCCTTCCTTTCAACCATTTCCCTCCTTAGAGATTCTGACATTTGAGGAGATGCTAGAGTGGGAGGAGTGGGACTTGATTGGAGGTACAACTATAGAGTTTCCTAGTCTAAAGCGTCTGTTTCTATGTGATTGTCCCAAACTCAAAGGAAACATACCAAACAATCTTCCTTCCTTAGTTGAACTTGAGTTGTCCCAATGTCCTCTACTCAAGTCACAAGCTCCATATGAGGTGGAAAGCAGCAACAATAGAAGGCCATCACATCTAGGATGGATGATGCTTGGACTTAATTCTCTTAGAGAGTTGACTATCTCAGGCATTCCCTCTTTAACATCCTTCCCAAGAGATGTTCTGCCGACAGCATTACAATCTCTCACTTTCCTTTCTTGTGAGAATTTGGAATTCTTACCTCATGAATCCTTGCAGAGCTATACCTCACTTGAGAAATTGCAAATATTCAATAGCTGTGATTCAATGATATCCTTTCCATTAGGCTGTTTCCCTGTGCTCAAAAGTCTCTTCATCTTGGGTTGTAAAAATCTGAAATCTATTTCTGTGGCAGAAAATGCATCACAGAGTCTCTCTTTTCTTCAAAGTTTATCCATATACACTTGTCCTAATCTGGATTCATTTCCACTAGGTGGACTAATCACTCCTAACCTCAACCATTTCCTGGTGTCAAGTTGTCGCAAGCTTAAGTCACTTCCAGAACCAATTAATACTCTATCAGGCCTTCATCAATTGAGTGTTTATGGGCTTCCAAATCTGCAAGCTTTTGCACAAGAGGGTCTACCTATCAATTTAAGAATACTTGAAGTCTCCAAATGTGGGAGTTTGTCTGCTCCAGATATCACTAAGTGGGGCTTGCAGCGGCTTACTTCTCTTACAGAGTTGCGAATTCGAGGTGATGGTCTTGTCGATGCGCTAATGAAAATGGAAGGGCAATTGCTTCCCACTTCTCTTGTGTCCCTACGCATCTCCCATCTTTACTATCTAAAATTCTTAGAAGGGAAGTGGCTTCAGCATCTCACCTCTCTTGAAAACCTTGAGATTTCAGACTGTCGCAAACTTGAATCCTTACCAGAAGACGGTCTGCCTTCCTCTCTTTCAGTTCTGACTATCAAGCGCTGCCTGTTACTGGAAGCAAGTTTCCAGAGAAATGGAGGGAAAGAGTGGCCTAATATTGCTCACATTCCATGCATAATTATCAATAACAAAGTAATAATATGA 5928 0.414 MRPGGVGGFVLNFLSSPFNRLPELIHSQIQALFQRLEHFAQQKDILHLKEGVSSIVWHGIPTSSVVDESAIYGRDDDKWILKDYLMSEDASASGSKIGVISIVGMGGIGKTTLAKLLYNDHEVEGNFDLKAWAYISKDFDVCRVTKTILESVTFKSVDTNNLNILQVELQQSLRHQRFLLVLDDIWDGSYVDWNNLMDIFSAGEMGSKIIITTRDESVAKAMQTSFPIYHLTSLAIEDCWSLLAKHAFGADRCNERSKLEVIGQEIAKKCGGLPLAAIALGGLLRTKLSQNYWNKVLKSNIWDLPNVKVLPALLLSYHHLPAPLKQCFAYCSIFPKNTKLEKKMSKGEETMEEVGDEYFDELVSRSLIHRDGQPYFKMHDLMNDLATMVSSSYCIRYDDRKSHESVERIRHLSYNKGKYDSFNKFGDIYQSKYLRTFIALPLKLWWLPEKCFGSHYLSNKVVHDLLPEMRQLRVLSLSHYYNITELPDSLGNLLHLRYLDLSNTKIQRLPNVICKLYNLQTLLLSKCWFLTELPEDIGNLVNLQHLNIRGTHLKKMPTQIARLQNLQTLSAFVVSKVQDGLKVGELRNFPHLKGELSISKLQNVTDPLEASQANLKKKELIEVLALEWDHGTTEDTQIVRLVLDQLQPPTNLKKLTIQCYGGTSFPNWLGDSSFANMVYLCIRDCDHCWSLPPLGQLLSLRELYISGMKSIKTVGTEFYGSGSSSFQPFPSLEVLSLKEMPEWEEWNLIGGTAIEFPSLRCLSLENCPKLKGTLPTKLPSLTFELSGCPLLFPIAMVCPKPIENTSTNLPGSIVLKCTNFILDLTISSIPSPASLPRDGLPTTLRSLTLRDCENLQFLPHESLHNYTSLENLTVHNSCSSMTSFTLGSLPVLKSLSIRGCKQLQSIAIAENASSHSLLLLEWLSIHCCPELESFPTRGLPTPNLYHLDYFAKEGLPVNLRGLAVCSPRSFWTETISEWGLQRLTCLAALRIGGDNLLNVLMKIQVPVLPTSLVSLVICNLHDVKCLGGIWLQHLTSLEKLEISYSPKLESLPEEGLPSSLSVLIIRQCPLLEARTMAMAVVGEAFLSASVEVLLERIVSQEFLFFFRSKQLDVSLLKKLKTTLLSLQAVLNDAEEKQITNPAVKEWLDELRDALYDADDLLDEVNTEALRCKLESGSQSKSQPFSDQVMNFLSSPFKSAKRHILGLKEGVSGRVWHGTPTSSVVDESAIYGRDDDKKILKDYLLSEGDHGCGSKIGVITMVGMGGLGKTTLAKLLYNDHEVEEKFDLKAWAYISKDFDVCRVTKSLLESVSSKPVVTNNLNIMQVELQQSLSNKRFLLDIVTELPDSLGNLLHLRYLNLSNTKIERLPNAVCKLYNLQTLLLSKCCLLTELPEDMGNLEMPAQISKLQNLQTLSTFVVSKKQDGLKVGELRKFHHLQGKLSILKLQNVTDPSDAFQSNLKKIEQIDELALEWDRNATEDSQMERCVLEQLEPSTNLKKLTIQFYGGTSFPNWLGDSSFGNMMYLRISGCGYCWSLPPLGQLLSLKELVISGLKTVKRVGTEFYGSGSPSFQPFPSLEILTFEEMLEWEEWDLIGGTTIEFPSLKRLFLCDCPKLKGNIPNNLPSLVELELSQCPLLKSQAPYEVESSNNRRPSHLGWMMLGLNSLRELTISGIPSLTSFPRDVLPTALQSLTFLSCENLEFLPHESLQSYTSLEKLQIFNSCDSMISFPLGCFPVLKSLFILGCKNLKSISVAENASQSLSFLQSLSIYTCPNLDSFPLGGLITPNLNHFLVSSCRKLKSLPEPINTLSGLHQLSVYGLPNLQAFAQEGLPINLRILEVSKCGSLSAPDITKWGLQRLTSLTELRIRGDGLVDALMKMEGQLLPTSLVSLRISHLYYLKFLEGKWLQHLTSLENLEISDCRKLESLPEDGLPSSLSVLTIKRCLLLEASFQRNGGKEWPNIAHIPCIIINNKVII* 1976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4206 1975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 331 IPR027417 -
Lja3g4206 1975 Gene3D Ribonuclease Inhibitor 1342 1741 IPR032675 -
Lja3g4206 1975 Coils Coil 1147 1167 - -
Lja3g4206 1975 PRINTS Disease resistance protein signature 491 507 - -
Lja3g4206 1975 PRINTS Disease resistance protein signature 99 114 - -
Lja3g4206 1975 PRINTS Disease resistance protein signature 270 284 - -
Lja3g4206 1975 PRINTS Disease resistance protein signature 172 186 - -
Lja3g4206 1975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1220 1338 IPR027417 -
Lja3g4206 1975 PANTHER DISEASE RESISTANCE PROTEIN RP 19 858 IPR044974 GO:0006952
Lja3g4206 1975 SUPERFAMILY L domain-like 1341 1637 - -
Lja3g4206 1975 Gene3D Ribonuclease Inhibitor 454 574 IPR032675 -
Lja3g4206 1975 Coils Coil 337 357 - -
Lja3g4206 1975 SUPERFAMILY L domain-like 377 792 - -
Lja3g4206 1975 ProSiteProfiles Leucine-rich repeat profile. 495 516 IPR001611 GO:0005515
Lja3g4206 1975 SMART LRR_typ_2 1351 1374 IPR003591 -
Lja3g4206 1975 SMART LRR_typ_2 493 516 IPR003591 -
Lja3g4206 1975 SMART LRR_typ_2 540 563 IPR003591 -
Lja3g4206 1975 SUPERFAMILY L domain-like 824 1072 - -
Lja3g4206 1975 Pfam Rx N-terminal domain 1085 1178 IPR041118 -
Lja3g4206 1975 PANTHER OS05G0414200 PROTEIN 1346 1683 - -
Lja3g4206 1975 SUPERFAMILY L domain-like 1652 1961 - -
Lja3g4206 1975 Gene3D - 1216 1341 IPR027417 -
Lja3g4206 1975 Gene3D - 55 228 IPR027417 -
Lja3g4206 1975 Pfam NB-ARC domain 1251 1338 IPR002182 GO:0043531
Lja3g4206 1975 Pfam NB-ARC domain 97 298 IPR002182 GO:0043531
Lja3g4206 1975 PANTHER DISEASE RESISTANCE PROTEIN RP 1346 1683 IPR044974 GO:0006952
Lja3g4206 1975 Gene3D - 316 388 IPR036388 -
Lja3g4206 1975 PANTHER OS05G0414200 PROTEIN 19 858 - -
Lja3g4206 1975 PANTHER OS05G0414200 PROTEIN 1096 1339 - -
Lja3g4206 1975 PANTHER OS05G0414200 PROTEIN 1705 1928 - -
Lja3g4206 1975 PANTHER DISEASE RESISTANCE PROTEIN RP 1096 1339 IPR044974 GO:0006952
Lja3g4206 1975 PANTHER DISEASE RESISTANCE PROTEIN RP 1705 1928 IPR044974 GO:0006952
Lja3g4206 1975 Gene3D - 1107 1202 - -
Lja3g4206 1975 Coils Coil 1116 1136 - -
Lja3g4206 1975 Gene3D Ribonuclease Inhibitor 941 1079 IPR032675 -
Lja3g4206 1975 Gene3D Ribonuclease Inhibitor 583 783 IPR032675 -
Lja3g4206 1975 Gene3D Ribonuclease Inhibitor 1783 1953 IPR032675 -
Lja3g4206 1975 Gene3D Ribonuclease Inhibitor 784 940 IPR032675 -
Lja3g4206 1975 Gene3D - 233 315 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4206 Lja-Chr3 81910511 81922883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4206 97 714 WRKY Transcription Factor Family AT5G45050 22.818 4.13e-09 60.1