Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4205 ATGAAAATGAAAATCCCTTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGCGTGTTCCGCTTCTACTCCAATGCGGCCATGGCTTCTGCAGAGAGTGTCTTTCTAGAATGTTCTCTGCTTCGCCGGACGCCACGCTCACGTGCCCCCGCTGCCGCCACGTGTCCACCGTCGGCAACTCAGTTCAAGCGCTGCGCAAGAACTACGCTGTTCTCTCGCTCATCCACTCCGCCGCGGAAGCCGCTTCCGCCGCCGGCGTCACTGGCGGAAAGTCCAGCTTCGACTGCGACTGCACCGATGAGGAGGACGGTGACGGTGACGACGATGAGAATGGAGATGACGAGGAGAAGCGGCGCCGGAACAGCCGCGGCTCGCAGGCGTCGAGCTCGGGGGGGTGTGCGCCGGTGATCGAGGTCGGGGCGCATCAGGACTTGAAGCTGGTGAAGCGGATTGGGGAGGGGAGGAGGGCTGGAGTGGAGATGTGGACGGCGGTGATCGGCGGTGGGAGGTGTCGGCATCATGTGGCGGTGAAGAAGGTGGCGATGATGGAGGGGATGGATTTGGAGTGGATGCAAGGGAAGTTGGAGAGTTTGCGTAAGGCTTCGATGTGGTGTAGGAACGTGTGCACGTTCCATGGAGCAATGAGGGTGGATGAGAGTGTGTGTCTTGTGATGGATAGGTGTTATGGATCGGTTCAGTCTGAGATGCAACGCAACGAGGGGAGGCTCACTTTGGAGCAAGTCCTAAGATATGGGGCAGATATTGCACGAGGGGTTGTTGAGCTTCATGCTGCAGGCGTTGTTTGCATGAATTTAAAACCTTCCAATTTACTTCTTGATGCCGATGGTCATGCTGTGGTCTCTGATTATGGACTTGCTACAATTCTGAAAAAGCCTTCCTGTTGGAAGGCTCGGCCAGAGTGTGACTCCTCAAAGATCCATTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACCGCACCTGAGGCTTGGGAACCTGTGAAGAAATCATTAAATTTGTTTTGGGATGATGGAATAGGTATATCTTCTGAATCAGATGCCTGGAGTTTTGGTTGTACCTTGGTGGAGATGTGCACGGGTGCCATTCCGTGGGCTGGTTTAAGTGCGGAGGAAATCTATCGGGCAGTTGTTAAAGCAAAGAGATTGCCTCCACAATATGCTAGTGTGGTTGGTGGTGGAATTCCTAGGGAATTGTGGAAGATGATTGGAGAGTGCCTGCAATTCAAGCCTTCTAAAAGGCCTACTTTTAATGCAATGCTAGCAATATTTCTCCGTCATTTGCAGGAAATACCGGGCAGCCCTCCTGCAAGCCCTGATAATGACTTCGCTAAGAGCTCCATATCAAATGTGACGGAGCCTTCCCCAGTGCCTGAATTAGAAGTTCCTCAGGAAAATCCAAACCATCTTCATCGACTAGTGTCTGAAGGGGTTGTCTCAGGTGTTAGAGACCTTCTAGCAAGGGCTGCATCAGAAAATGGCAGCAACTACATATTTTCTTTATTGGAAGCTCAAAATGCTGATGGGCAAACAGCTCTCCACTTAGCTTGTAGACGTGGCAGTGCAGAACTTGTTGAGGCAATTCTGGAGTATGAAGAGGCAAATGTTGATGTCTTGGACAAAGATGGAGATCCTCCTCTCGTTTTTGCCTTAGCAGCTGGGTCTCCTGAATGTGTTCGTAGCCTCATCAAAAGAAATGCCAATGTGAGGTCGCGATTGAGAGATGGCATTGGCCCATCAGTAGCTCACGTTTGTGCCTATCATGGACAACCAGATTGTATGCGGGAATTACTATTAGCTGGAGCTGATCCTAACGCAGTGGATGATGAAGGTGAATCTGTACTGCATCGGGCAGTTGCCAAGAAGTACACAGACTGTGCTGTTGTAATAGTGGAAAATGGAGGCTGCAGATCCATGATCATCTCGAATTCAAAGAACCTGACACCACTTCACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTCCCGATGAGATCGCTGAAGCAATTGACATACCAAGTCCTATTGGCACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGATCATGAAAGTGAGGGGAGAGAACTGGTGCGGATATTACTTGCGGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGACGGCTTTGCATACAGCTGCTATGACTAACGATGTAGACTTGGTTAAGGTTATTCTTGCTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCATTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGTTGGACTGCTTCTAGCTTCTGGGGCAGATTATAATTTGCAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGAGACTGCAAAAATGATACGTGAAAATCTTGACTGGCTTATTGTTATGCTAAAGAATCCCAATGCTGATATTGAGGTTAGAAACCACAGTGGCAAGACACTACGTGACATCTTAGAGGCTCTCCCCCGAGAATGGATGTCAGAAGATTTGATGGAGGCACTCATGAATAGAGGAGTTCATTTGTCTTCTACAATATTTGAAGTGGGGGACTGGGTGAAGTTCAAAAGAACTGTCATAACTCCATCATATGGGTGGCAAGGTGCTAGACCAAAGAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAGGGATAATCTCATTGTTTCATTTTGTTCGGGGGAGGTTCATGTGCTGGCAAATGAAGTTGTAAAAGTCATTCCATTGGACAGGGGACAACATGTACAATTGAAAGAAGATGTAAAAGAGCCAAGGTTTGGTTGGCGTGGGCAGTCACGTGATAGCATTGGGACAGTATTATGTGTTGACGATGATGGAATCCTCCGTGTTGGATTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCTGAGATGGAACGGGTTGAGGAATTCAAGGTTGGAGACTGGGTTCGTATTCGTCCAACTCTTACATCTGCAAAGCATGGACTAGGATCTGTGACACCAGGAAGCATTGGCATTGTATATTGTATCCGACCAGACAGTAGTCTGTTAATAGAACTGAGCTATCTTCCAAATCCATGGCATTGTGAACCGGAGGAGGTTGAGCATGTTGCTCCGTTTAGGATTGGTGATCGGGTATGTGTGAAGCGATCTGTTGCAGAACCTAGATATGCCTGGGGTGGTGAGACGCATCATAGTGTTGGAAGAATAAGTGAGATTGAGAATGATGGTCTCTTAATAATCGAAATACCTAATCGACCCATACCATGGCAGGCTGATCCATCTGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTGTCTTCTCCAAAATATGGATGGGAGGATATTACAAGGAACAGTATTGGGGTAATTCATAGCTTGGAGGAGGATGGTGATATGGGTGTTGCCTTTTGCTTCAGAAGTAAGCCTTTTTCATGCTCAGTCACTGATGTGGAGAAAGTTCCCCCTTTTGAGGTGGGGCAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGGCTCGGGTGGTCAAATGAATCACCAGCTACTGTTGGAAAAATAGTGAAAATTGATATGGATGGTGCTCTCAATGTGAAGGTTGCATGTAGGCAGAGCTTATGGAAAGTTTCTCCTGGAGATGCAGAACGGCTTCCAGGATTTGAAGTTGGGGATTGGGTGCGTTCAAAATCAAGCCTGGGAACTAGACCAAATTATGACTGGAATAGTGTTGGGAGAGATAGTTTAGCAGTTGTGCATAGTGTTCAGGAGTCTGGATACTTGGAGTTGGCTAGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACCGATGTTGAAAAGGTTCCTAGCTTCAAAGTCGGGCAGTATGTTAGGTTCCGAACTGGGTTGGTTGAACCGAGATGGGGTTGGAGAGGAGCCCAACCTGAATCTCAAGGGATTATAACCAGTATTCATGCTGATGGAGAAGTCAGGGTCGCATTCTTTGGTTTGCCAGGACTGTGGAAAGGAGATCCTTCAGACCTGCAGATAGAGCAAATCTTTGAAGTGGGAGTGTGGGTGAGATTGAAAGATAACGCAAATAATTGGAAATCAATTGGGCCAGGTAGTGTTGGCGTCGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCACTTTTGTTGGCTTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGAGTTGACAAACTCCTTGTTGGACAGAAGGTTAGAGTCAAACAATACGTAAAGCAACCAAGATTCGGATGGTCAGGGCACAGCCATGCTAGTATCGGGACTATACAAGCAGTTGATGCTGATGGAAAACTTCGAATATACACACCGGCAGGTTCAAAAGCATGGATGTTGGACCCTTCAGAAGTTGATGTGGTAGAAGAGAAGGAGCTCTGTATTGGAGACTGGGTGAGGGTTAGATCATCAGTTTCAACCCCAACCCACCATTGGGGGGAAGTGAGTCATTCCAGCATTGGGGTGGTGCATCGGATGGAAGATGAGGATCTGCGGGTGGCGTTTTGTTTTATGGACAGGCTATGGCTTTGTAAGGCCGGGGAAATGGAACGGGTTAGGGCATTCAAAGTTGGGGACAAGGTAAAGATCAGAGATGGACTGGTAGCCCCAAGGTGGGGTTGGGGAATGGAGACACATGCTAGCAAGGGACAAGTAGTAGGGGTAGATGCAAATGGGAAAGTAAGAATAAGGTTCCGATGGAGGGAAGGGAGGCCCTGGATAGGAGACCCTGCAGATATTGCCCTTGATGAGAACTGA 4890 0.48 MKMKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASPDATLTCPRCRHVSTVGNSVQALRKNYAVLSLIHSAAEAASAAGVTGGKSSFDCDCTDEEDGDGDDDENGDDEEKRRRNSRGSQASSSGGCAPVIEVGAHQDLKLVKRIGEGRRAGVEMWTAVIGGGRCRHHVAVKKVAMMEGMDLEWMQGKLESLRKASMWCRNVCTFHGAMRVDESVCLVMDRCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDADGHAVVSDYGLATILKKPSCWKARPECDSSKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRAVVKAKRLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPGSPPASPDNDFAKSSISNVTEPSPVPELEVPQENPNHLHRLVSEGVVSGVRDLLARAASENGSNYIFSLLEAQNADGQTALHLACRRGSAELVEAILEYEEANVDVLDKDGDPPLVFALAAGSPECVRSLIKRNANVRSRLRDGIGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAVVIVENGGCRSMIISNSKNLTPLHLCVATWNVAVVKRWVEVATPDEIAEAIDIPSPIGTALCMAAASKKDHESEGRELVRILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVKVILAAGVDVNIRNVHNSIPLHLALARGAKACVGLLLASGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLKNPNADIEVRNHSGKTLRDILEALPREWMSEDLMEALMNRGVHLSSTIFEVGDWVKFKRTVITPSYGWQGARPKSVGFVQSVPDRDNLIVSFCSGEVHVLANEVVKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDITRNSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMPSVTQPRLGWSNESPATVGKIVKIDMDGALNVKVACRQSLWKVSPGDAERLPGFEVGDWVRSKSSLGTRPNYDWNSVGRDSLAVVHSVQESGYLELASCFRKGKWITHYTDVEKVPSFKVGQYVRFRTGLVEPRWGWRGAQPESQGIITSIHADGEVRVAFFGLPGLWKGDPSDLQIEQIFEVGVWVRLKDNANNWKSIGPGSVGVVQGIGYEGDELDRSTFVGFCGEQEKWVGPSSHLERVDKLLVGQKVRVKQYVKQPRFGWSGHSHASIGTIQAVDADGKLRIYTPAGSKAWMLDPSEVDVVEEKELCIGDWVRVRSSVSTPTHHWGEVSHSSIGVVHRMEDEDLRVAFCFMDRLWLCKAGEMERVRAFKVGDKVKIRDGLVAPRWGWGMETHASKGQVVGVDANGKVRIRFRWREGRPWIGDPADIALDEN* 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4205 1629 ProSiteProfiles Ankyrin repeat region circular profile. 516 538 - -
Lja3g4205 1629 ProSiteProfiles Ankyrin repeat profile. 516 549 IPR002110 GO:0005515
Lja3g4205 1629 Pfam Ankyrin repeats (3 copies) 710 795 IPR002110 GO:0005515
Lja3g4205 1629 Pfam Ankyrin repeats (3 copies) 496 578 IPR002110 GO:0005515
Lja3g4205 1629 Gene3D Transferase(Phosphotransferase) domain 1 140 438 - -
Lja3g4205 1629 ProSiteProfiles Protein kinase domain profile. 146 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4205 1629 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 3 1628 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Lja3g4205 1629 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Lja3g4205 1629 Gene3D - 692 772 IPR036770 -
Lja3g4205 1629 CDD RING-HC_ScPSH1_like 7 54 - -
Lja3g4205 1629 MobiDBLite consensus disorder prediction 100 135 - -
Lja3g4205 1629 SUPERFAMILY Protein kinase-like (PK-like) 142 460 IPR011009 -
Lja3g4205 1629 Pfam RING-type zinc-finger 8 51 IPR027370 -
Lja3g4205 1629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 85 IPR013083 -
Lja3g4205 1629 SUPERFAMILY RING/U-box 6 78 - -
Lja3g4205 1629 Pfam Ankyrin repeats (many copies) 588 635 IPR002110 GO:0005515
Lja3g4205 1629 ProSiteProfiles Ankyrin repeat profile. 764 796 IPR002110 GO:0005515
Lja3g4205 1629 PRINTS Ankyrin repeat signature 713 727 IPR002110 GO:0005515
Lja3g4205 1629 PRINTS Ankyrin repeat signature 517 532 IPR002110 GO:0005515
Lja3g4205 1629 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 3 1628 - -
Lja3g4205 1629 SUPERFAMILY Ankyrin repeat 502 839 IPR036770 -
Lja3g4205 1629 Pfam Mind bomb SH3 repeat domain 872 990 IPR040847 -
Lja3g4205 1629 Pfam Mind bomb SH3 repeat domain 1122 1240 IPR040847 -
Lja3g4205 1629 Pfam Mind bomb SH3 repeat domain 1375 1496 IPR040847 -
Lja3g4205 1629 Pfam Mind bomb SH3 repeat domain 1248 1369 IPR040847 -
Lja3g4205 1629 Pfam Mind bomb SH3 repeat domain 1052 1116 IPR040847 -
Lja3g4205 1629 Pfam Mind bomb SH3 repeat domain 1559 1623 IPR040847 -
Lja3g4205 1629 ProSiteProfiles Ankyrin repeat profile. 731 763 IPR002110 GO:0005515
Lja3g4205 1629 Pfam Protein kinase domain 149 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4205 1629 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515
Lja3g4205 1629 ProSiteProfiles Ankyrin repeat profile. 550 582 IPR002110 GO:0005515
Lja3g4205 1629 Gene3D - 773 861 IPR036770 -
Lja3g4205 1629 Gene3D - 452 684 IPR036770 -
Lja3g4205 1629 SMART ANK_2a 691 726 IPR002110 GO:0005515
Lja3g4205 1629 SMART ANK_2a 731 760 IPR002110 GO:0005515
Lja3g4205 1629 SMART ANK_2a 797 832 IPR002110 GO:0005515
Lja3g4205 1629 SMART ANK_2a 585 614 IPR002110 GO:0005515
Lja3g4205 1629 SMART ANK_2a 550 579 IPR002110 GO:0005515
Lja3g4205 1629 SMART ANK_2a 764 793 IPR002110 GO:0005515
Lja3g4205 1629 SMART ANK_2a 516 546 IPR002110 GO:0005515
Lja3g4205 1629 SMART ANK_2a 618 647 IPR002110 GO:0005515
Lja3g4205 1629 SMART ANK_2a 653 684 IPR002110 GO:0005515
Lja3g4205 1629 ProSiteProfiles Ankyrin repeat region circular profile. 764 796 - -
Lja3g4205 1629 ProSiteProfiles Ankyrin repeat region circular profile. 731 762 - -
Lja3g4205 1629 SMART ring_2 8 53 IPR001841 -
Lja3g4205 1629 ProSiteProfiles Zinc finger RING-type profile. 8 54 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4205 Lja-Chr3 81886669 81905636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4205 208 429 MAP Kinase Kinase Kinase AT2G31800 31.140 9.04e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Lja3g4205 Pkinase 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4205 K16279 - gmx:100777576 3043.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4205 3 81886669 81905636 Lja3g4205 3 81886669 81905636 ECH