Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4202 ATGGTTGAATCTATGGAATCTGAAGAAATCCCCAAATTCCATGATATTAGACGCTATTTCTGTGAATACTGCGGTATCTGCAGATCCAAAAAAACCCTCATCACAGCTCACATCAATTCACACCACAAGGAGGAGGTGGAAAAAAGAGTTGAAGGAGAATCTGAAACAGAGGCTTCAAAGCCTAAAACTTGTGAGCAATGTGGTGCTAGTTTCAAAAAACATGCCTACTTGTTGCAGCACATGCGAAGTCATTCGGCTGAGAGGCCATATGTGTGTACTGTTGATGATTGTAAGGCAAGTTACAGAAGAAAGGACCACTTGACTCGCCACCTTTTACAGCACCAGGGGAAAACTTTCAAGTGTCCTATTGAGAATTGCAACAGTAGCTTCTCTATACAAAGCAATTTGAAAAGACATGTCGATGAGCTTCACGATGGCAAGTCTACCTCTACTTGTGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAGTTGGCTGTGGAAAGGTTTTCAGATATGCATCAAAGCTACGGAAGCATGAAGATTCTCATGTTAAGCTGGACTCAGTTGACGTCGTGTGCTTAGAACCTGGATGCATGAAACATTTCACTAATGCCCAGTGTCTTAGAGACCATGTTAAGTCCTGCCATCAATACGTGACTTGTGACATTTGTGGGACTAAGCAACTGAAGAAGAATTTGAAGAGGCACCTCCGTGCACATGAAGCCGGCAGTTCATCAGAGTTGTTTCAATGTGAATATGAGGGTTGTGACTGTACATTCTCATCAAAACCTAATCTTCACACGCATGAGAAGGCTGTGCACTTCAAAGAAAAACCTTATGTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCATACAAACATGTGAGAGATAACCATGAACAAACTGCCAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCTAGGCCCAGAGGAGGGAGAAAGAGAGTATGCCCTACTGTTGAAATGTTAATTAGGAAGAGAGTTACCCCACCAAGTCAATTAGAGAGCTGGTTACATATGCAGGATAGTGAATAA 1080 0.4222 MVESMESEEIPKFHDIRRYFCEYCGICRSKKTLITAHINSHHKEEVEKRVEGESETEASKPKTCEQCGASFKKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQGKTFKCPIENCNSSFSIQSNLKRHVDELHDGKSTSTCVESQKQYVCPEVGCGKVFRYASKLRKHEDSHVKLDSVDVVCLEPGCMKHFTNAQCLRDHVKSCHQYVTCDICGTKQLKKNLKRHLRAHEAGSSSELFQCEYEGCDCTFSSKPNLHTHEKAVHFKEKPYVCGFPDCGMRFAYKHVRDNHEQTAKHVFTLGDFEEADEQFRSRPRGGRKRVCPTVEMLIRKRVTPPSQLESWLHMQDSE* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4202 359 Gene3D Classic Zinc Finger 157 183 - -
Lja3g4202 359 SMART c2h2final6 90 114 IPR013087 -
Lja3g4202 359 SMART c2h2final6 219 240 IPR013087 -
Lja3g4202 359 SMART c2h2final6 191 216 IPR013087 -
Lja3g4202 359 SMART c2h2final6 119 144 IPR013087 -
Lja3g4202 359 SMART c2h2final6 62 84 IPR013087 -
Lja3g4202 359 SMART c2h2final6 159 183 IPR013087 -
Lja3g4202 359 SMART c2h2final6 249 274 IPR013087 -
Lja3g4202 359 SMART c2h2final6 19 41 IPR013087 -
Lja3g4202 359 SMART c2h2final6 280 306 IPR013087 -
Lja3g4202 359 ProSitePatterns Zinc finger C2H2 type domain signature. 251 274 IPR013087 -
Lja3g4202 359 PANTHER ZINC FINGER PROTEIN 9 349 - -
Lja3g4202 359 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lja3g4202 359 PANTHER - 9 349 - -
Lja3g4202 359 SUPERFAMILY beta-beta-alpha zinc fingers 60 114 IPR036236 -
Lja3g4202 359 MobiDBLite consensus disorder prediction 39 60 - -
Lja3g4202 359 SUPERFAMILY beta-beta-alpha zinc fingers 100 157 IPR036236 -
Lja3g4202 359 Gene3D Classic Zinc Finger 90 114 - -
Lja3g4202 359 Gene3D Classic Zinc Finger 277 303 - -
Lja3g4202 359 ProSitePatterns Zinc finger C2H2 type domain signature. 282 306 IPR013087 -
Lja3g4202 359 ProSitePatterns Zinc finger C2H2 type domain signature. 193 216 IPR013087 -
Lja3g4202 359 ProSitePatterns Zinc finger C2H2 type domain signature. 161 183 IPR013087 -
Lja3g4202 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 119 IPR013087 -
Lja3g4202 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Lja3g4202 359 SUPERFAMILY beta-beta-alpha zinc fingers 230 288 IPR036236 -
Lja3g4202 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 149 IPR013087 -
Lja3g4202 359 ProSitePatterns Zinc finger C2H2 type domain signature. 121 144 IPR013087 -
Lja3g4202 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 188 IPR013087 -
Lja3g4202 359 Gene3D Classic Zinc Finger 4 89 - -
Lja3g4202 359 ProSitePatterns Zinc finger C2H2 type domain signature. 92 114 IPR013087 -
Lja3g4202 359 SUPERFAMILY beta-beta-alpha zinc fingers 156 183 IPR036236 -
Lja3g4202 359 Gene3D Classic Zinc Finger 217 276 - -
Lja3g4202 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 279 IPR013087 -
Lja3g4202 359 MobiDBLite consensus disorder prediction 39 61 - -
Lja3g4202 359 Gene3D Classic Zinc Finger 115 156 - -
Lja3g4202 359 Pfam Zinc finger, C2H2 type 119 144 IPR013087 -
Lja3g4202 359 Pfam Zinc finger, C2H2 type 63 84 IPR013087 -
Lja3g4202 359 Pfam Zinc finger, C2H2 type 159 183 IPR013087 -
Lja3g4202 359 Pfam Zinc finger, C2H2 type 90 114 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4202 87 309 C2H2 Transcription Factor Family AT1G72050 50.545 4.64e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g4202 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4202 K09191 - gmx:100801812 601.282