Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4199 ATGGAGAACAAAGTAGAGAACCAAGAACATCACCACCCTGCATCTCTCCTCCCCAATATTCATAGCACCATCACAGCCAAGGAAGAGTCTCCAAGAAAAGCCATTGGTGGCGGCGGCAGTGGTGGTGGTGGTGACAGGCTGAAGAGGGATGAGTGGAGTGAAGGAGCTGTGTGTACACTTCTTGAGGCCTATGAAGCCAAGTGGGTGCTCAGAAACAGAGCAAAACTCAAAGGCCAGGATTGGGAAGAGGTTGCAAAACATGTCTCTTCAAGAGCAAACAACACTAAGTCACCAAAGACACAGACACAGTGCAAGAACAAGATAGAGTCCATGAAAAAAAGGTACAGATCAGAGTCAGCAACTGCTACAGATGCAGCATCTTCTTGGCCATTGTATTCTCGTCTTGATGTTCTGCTTCGTGGGACAGGACCTGTGTCACCACTTCCACAGCCACAAACAGCGGCAACAGCAGCACCTTCTCAATCACCACACCCCAGCAATAACCATGCCTTGATGTTGCTAGAGCCATCACTTGCAGTGTCACAAGCTCCCTATGAACCACCACCTCCTCCAGTTGCTCCTCCTCCAGCTGCTACTGCACAAAACTCATATGGATCCAATGGTGTTGACAAATTAGCCAAGGAAGAAGGATTAGGAACTAAGTCATCTGATCATGTGTCTAACAAGAATCCAGTGGACACAGATAGCAGCACACCTGCACTTTACAGTGAAAAGGAGGAGCTAAGATGCAACAAGAGGAAGATGAAAACAGAGAACATGAACAAGAGAAGAAGGAAAGAAGACTCAGAGATAGCAGAGAGCATAAGGTGGCTAGCAGAAGTGGTGGTGAGGTCAGAACAAACAAGAATGGACACAATGAAAGAGATAGAGAAGATGAGAGTTGAAGCTGAGGCAAAGAGAGGGGAAATGGATCTCAAAAGAACTGAAATCATTGCCAACACACAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCATCATTGAGAATTGGAAGAAGCTAA 1038 0.4605 MENKVENQEHHHPASLLPNIHSTITAKEESPRKAIGGGGSGGGGDRLKRDEWSEGAVCTLLEAYEAKWVLRNRAKLKGQDWEEVAKHVSSRANNTKSPKTQTQCKNKIESMKKRYRSESATATDAASSWPLYSRLDVLLRGTGPVSPLPQPQTAATAAPSQSPHPSNNHALMLLEPSLAVSQAPYEPPPPPVAPPPAATAQNSYGSNGVDKLAKEEGLGTKSSDHVSNKNPVDTDSSTPALYSEKEELRCNKRKMKTENMNKRRRKEDSEIAESIRWLAEVVVRSEQTRMDTMKEIEKMRVEAEAKRGEMDLKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4199 345 MobiDBLite consensus disorder prediction 223 239 - -
Lja3g4199 345 MobiDBLite consensus disorder prediction 146 168 - -
Lja3g4199 345 Gene3D - 52 117 - -
Lja3g4199 345 Pfam Myb/SANT-like DNA-binding domain 49 137 IPR044822 -
Lja3g4199 345 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 24 341 - -
Lja3g4199 345 MobiDBLite consensus disorder prediction 240 270 - -
Lja3g4199 345 Coils Coil 245 265 - -
Lja3g4199 345 MobiDBLite consensus disorder prediction 182 197 - -
Lja3g4199 345 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 24 341 IPR044823 -
Lja3g4199 345 MobiDBLite consensus disorder prediction 1 49 - -
Lja3g4199 345 MobiDBLite consensus disorder prediction 181 270 - -
Lja3g4199 345 MobiDBLite consensus disorder prediction 143 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4199 Lja-Chr3 81816879 81820511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4199 31 328 Trihelix Transcription Factor Family AT3G14180 26.257 3.42e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja3g4199 Myb_DNA-bind_4 2.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4199 - - gmx:100799917 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4199 3 81816879 81820511 Lja3g4199 3 81816879 81820511 ECH