Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4194 ATGAGCATGTTAGGCCTAAGAGATCTAGTTTTCATAGCTCCAAACCCATCTTCCCTGCACCACCAACACCAACACCAAGTCCAACCCATTTCATCAGACCCCAATTCCAACCTTAATCCTCTCCCTTCATCAGCTTCCCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTAACCGCCACTCCTTGCATGCCACAACAACAACACCAACAACACCCTCAGAACAACAACAATGAAGTTCAAAACCAAGAGTGTGCTGCTAACAACACCAACACCAACACCAACACCAACACCGCCACTAACTATTGGAACCTCAAAATGTGCCCAGAAGTGGATCCTGATCCTCCAAAGAAAGGTGCAATGAACAACCTCGTGGATGATGATGAGAACCACCACAACAACAACAACAAGCTCGTGATGACAACGTCTGAGAGTGAAGAAAACGGTGTTTACGGTCCTGATTTCAGGGTTTGTCAAGATTGCGGAAACAGAGCAAAGAAGGATTGTCTCTTTAGAAGGTGCAGGACATGTTGTAAGGGGCGCGGGTATGACTGCAACACGCACGTGAAGAGCACGTGGGTTCCTGCAGTTCGCCGCCGCGAGCGCGAGGTGACGGTGGTTTCCGGCGGTGAGGGTGGTGGTGGTGGTGATGGTGGTTGCTCTGTTGTTAAGAGGCCAAAGCCTTTTTCACATAATGCAACTGCCACCTCTCACAGCTCCAAAAGCTTAGCTAATAGCTCTTGCCACCAAGATGCTGGGTTCAAAGAGAGTTTACCAGGTCATGTCCGTGCACCTGCAGTGTTCAGGTGCCACAGAGTCACTGCTATTGGCAATGGTGAAGATGAGTTTGCTTACTTGGCCACGGTTCATATCAGTGGGCATGTGTTTCAGGGGTTTCTTTATGATCATGGTGTTGGTGGGAAAAATGCTTGTGTTTCAGAGCTGCAACTGGGAAAGAATTGTAGTGGGAAGAATGGGGATTCTGCAATTGGGGTTCCACACAATCATGCCTACCCTGCTTCTGCTAGTTGA 1029 0.4888 MSMLGLRDLVFIAPNPSSLHHQHQHQVQPISSDPNSNLNPLPSSASLSVGFGIFPLLTATPCMPQQQHQQHPQNNNNEVQNQECAANNTNTNTNTNTATNYWNLKMCPEVDPDPPKKGAMNNLVDDDENHHNNNNKLVMTTSESEENGVYGPDFRVCQDCGNRAKKDCLFRRCRTCCKGRGYDCNTHVKSTWVPAVRRREREVTVVSGGEGGGGGDGGCSVVKRPKPFSHNATATSHSSKSLANSSCHQDAGFKESLPGHVRAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFQGFLYDHGVGGKNACVSELQLGKNCSGKNGDSAIGVPHNHAYPASAS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4194 342 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 341 IPR007818 GO:0003700|GO:0006355
Lja3g4194 342 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 156 198 IPR006510 -
Lja3g4194 342 Pfam Domain of unknown function (DUF702) 156 304 - -
Lja3g4194 342 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 341 - -
Lja3g4194 342 MobiDBLite consensus disorder prediction 19 43 - -
Lja3g4194 342 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 257 304 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4194 Lja-Chr3 81734206 81735956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4194 1 328 C2H2 Transcription Factor Family AT5G12330 38.416 2.05e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lja3g4194 DUF702 2.7e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4194 - - gmx:100806835 372.089