Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4182 ATGCCTCGTTTGTCACTACGCTCCCGTTACCCACCGCCAAAACCAATGTCCACCCACGACCCCTTCTCGGGTCACAAACTCTGCGGTTACCTCTGCGCGCTTTTCACGGCCACCGATGGCCCGCGTTTCACCGAGCGCTGCGAGATTCTCTCCGACGGGGTTGGATTCCGGTGCCAGAGCGGCGTCGTGTTGTCCCCTCTTGAGACCGGCGACTCCTCCTCCAATGGGAAGAAGAAGACGAGGATGGTTGGCACGGTGAAGGGAAGCGTTAGCGTGGTTCAACAGCTTTACGCTCTGGTTCGCCGCCGTAATTGTGTGCGGATTGATGCTCGTGTTGTGTGGGTTGAGATGCCTATGGTTGTGGTGATGATTGATGTTTACATTCCGATTCAGTTGTGGAGTGGTTGGCAGTTCCCGAAATTGGGGGCTGTTGCTGGTGCTGTTTTTCAGCATTTGAGCTGTGATTGGGATAAGAGAAGTTCAATGCTTTCTTATCCTGACTATTGTAGGAAGACACATGGAGCAGATGAGAGCATTTGGAGCCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTTCCGTATGAGTGGTTCTTCAAGGAAAGGGTTATTTGAACTTCCTGAAATTTTTAAGACAGTCCCTGGTGCAGGAGAAGAGCATAAAATTATTAATTCCAAGATAGTACCTATGGATAACACTTGCAGATCTGGCATTTGTGAGATACCTGATGATGTTTTAACCAAAATTCTAGCTTATCTGGGCCCAGTGGACCTTACTAGGGTTTCTTCAACATGTCATCATCTTAGATCCTTGGCTGATTCAATAGTGCCTTGTACAAAGTTAAAGCTGTATCCTCATCAGCAGGCAGCAGTCGAGTGGATGTTTCATCGGGAGCGAAATGCTGAACTCTTGCCACATCCCTTATATGTGTCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTAACTGGTGAAATAGTCACTGGGGAAGCTCCGAGGATCAGAGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCCCTTTCTCTTATTATGAAGACGCAAGGTAAGTGGGCAGACCCACCAAATGGAGCACACATAGTCTGGTGTCAACATAATGGTAACCAGAAATGTGGCTACTACGAAACAAATGCTAAAAGCATTACTGGTTGTACTATCTTGGGTAAGAGGGATGTGTACCAAGATACCGGTATAAATAATGAGAACCCTAACTATTCCTCCAAAAAAGCCAGATTGATGGATCCTTTTCAGAAAAGCTCTAATCTTCATGATTCAAGTTCTGGGGAAGAAATTAAATCACCTATTGATGCATCTATGCCTACAAGTCGGTGCACTAGGGGCTTGAGTCTCATAAAGAAGAATCTACATTTCACACATGGAGAGGAAGCGATGATTGTCAATGAAAGAAAAGTTGGTGAAAGATCAAATAAAATAGAGCATGCGTCTGATGAGGCATCCCATGCATCTCAAAACAAACTAGTTGATACTGCATCTGAATGTGAACAGGGTTACAAGTTGCCTAGGAAGCGTAAAGTCAATTTTTTGGAATACAATGAAACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTATCCGACAATAGTATGGCTAATTCTAATGCAGCATGGTTTTGTAGTATGAACAATGACCCTTCATATCAGAGTTGCAGTGTCCCTGAACAATATATTCAGAATAATTGTAAGATAACTTTCATGCCAGGATTTCACTTGAAGGGAACTCCTGGGGGTGAGGCACATAATGTTTCATTTTTCACTAGTGTGCTTAAGGAGCACTCCTCATTGATGAATTTGCATACAAGGAAGGCCCTGACTTGGTTGGCTAAGATTTCGACCGACAAGCTTGCTGTAATGGAAACAAATGGCATAAGGGGTCCTATTTTACACAATAATGGAAATTTTGTTCCATTCCACAAAATATTTAAAGCATTTGGCCTCGCAAAGAGAGTAGAGCAAGGTGTATGCAGATGGTACTACCCACATAATCTTAACAATTTGACTTTTGATGCGGCTGCCCTTGGCATGGCTCTCCGTGAGCCATTGGATTTTGTTAGGTTTTACTTGTCAAGGGCAACATTGGTAGTTGTTCCTGCAAATTTGGTTGACCATTGGGGAACCCAAATAGAAAAGCATGTCAAGCATGGTCAGTTGCGGGTTTGTGTTTGGACTGATCATCGGAAGCCATCTGCACATTCTCTTGCTTGGGATTATGATATTGTCATCACTACATTTAGTCGTTTGAGTGCAGAGTGGAGTCCATGTAAGAGGAGTTCTCTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCCTGAGCTTAACAAATAAGCTTCAAATGGCTATTTCATTGACGGCTTCGAATAGGTGGATTCTAACAGGAACTCCAACACCTAACACTCCTAACAGCCAACTTCCTCATCTACAACCATTGCTAAGGTTCCTCCATGAAGAAGCTTATGGACTGAATCAGAAGTCATGGGAAGCTGGTGTACTTAGGCCATTTGAGGCAGAGATGGAGGAAGGTCGGTCTCGTCTGTTGCATTTACTTCACAAATACATGATTAGTGCAAGAAAGATAGATTTGCTAAGTATTCCACCATGCATCAAGAAAGTTACTTTTCTAGATTTTAACGAGGAGCATTCTAGAAGTTATAATGAGCTGGTACTCACAGTTCGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCACATGTAGAGAGTCTGTTGAATCCAAAGCAAGGGAAATTTCGAAGTGCGACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCGGGACATATTAAAGTTACACATGCAGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTAGATCCTACTTCAGGAGAGTATACCTCCATAAGATATAATCTCGTTTATGGTGGTCATTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTCTCATTACACCATGTCGACATCTGTTGTGCCTTGATTGTGTTTCAACAGACAATACGAAATGTACATATCCTGGCTGTGGTAACTTATATGAGATGCAGAGTCCTGATACAATGGCACGACCAGAAAATCCAAACCCAAAATGGCCTGTACCTAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCTGATTGGCAGTCTACTTCTAGTAGTAAAGTCTCCTATCTCATCCAAAGGTTGAAAGCTTTGCAAGAAACCAATAAAGAGATGAGCTTGTGTACAGATAATATTAATGATGAGACGCATCCTGAGAATAGTTTCCCTTTGAATGTGAGAGATGCCAAATCATTAATCCAGAAATTTTCTACAAGTGGCACTAAGACCAATTCGGTCTCTGAAAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTGTTAATGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCTGCAACAAGAAAAAGTCATTAGCTATGTTCCAGCATGATTCAAGTTGTATGGTACTTCTGATGGATGGAAGTGCTGCGTTGGGTCTTGACTTGAGCTTTGTGTCACATGTGTTTTTAATGGAGCCAATTTGGGACAGAAGTTTGGAGGAGCAAGTAATTAGTCGTGCCCATCGGATGGGTGCTTCTCGTCCTATTCATGTGGAAACATTAGCAATGCGCGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGATGCTGATAAATGTAGAAGATCGCCAATTAAAGATGCTGTCAAATCTGAAGATGACAGTGGGGGACGAGGATATCGATCATTGCATGATTTTGCAGGAAGTAGTTATCTGCAGAAACTTAGATTTGTGCACACTAATTCAGAATCTTAG 3984 0.4237 MPRLSLRSRYPPPKPMSTHDPFSGHKLCGYLCALFTATDGPRFTERCEILSDGVGFRCQSGVVLSPLETGDSSSNGKKKTRMVGTVKGSVSVVQQLYALVRRRNCVRIDARVVWVEMPMVVVMIDVYIPIQLWSGWQFPKLGAVAGAVFQHLSCDWDKRSSMLSYPDYCRKTHGADESIWSLSDCHVLGCKLHFRMSGSSRKGLFELPEIFKTVPGAGEEHKIINSKIVPMDNTCRSGICEIPDDVLTKILAYLGPVDLTRVSSTCHHLRSLADSIVPCTKLKLYPHQQAAVEWMFHRERNAELLPHPLYVSLSTDDGFSFHVNTVTGEIVTGEAPRIRDFRGGMFCDEPGLGKTVTALSLIMKTQGKWADPPNGAHIVWCQHNGNQKCGYYETNAKSITGCTILGKRDVYQDTGINNENPNYSSKKARLMDPFQKSSNLHDSSSGEEIKSPIDASMPTSRCTRGLSLIKKNLHFTHGEEAMIVNERKVGERSNKIEHASDEASHASQNKLVDTASECEQGYKLPRKRKVNFLEYNETWIQCDACHKWRKLSDNSMANSNAAWFCSMNNDPSYQSCSVPEQYIQNNCKITFMPGFHLKGTPGGEAHNVSFFTSVLKEHSSLMNLHTRKALTWLAKISTDKLAVMETNGIRGPILHNNGNFVPFHKIFKAFGLAKRVEQGVCRWYYPHNLNNLTFDAAALGMALREPLDFVRFYLSRATLVVVPANLVDHWGTQIEKHVKHGQLRVCVWTDHRKPSAHSLAWDYDIVITTFSRLSAEWSPCKRSSLMQVHWFRIILDEGHTLGSSLSLTNKLQMAISLTASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKYMISARKIDLLSIPPCIKKVTFLDFNEEHSRSYNELVLTVRRNILMADWNDPSHVESLLNPKQGKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRYNLVYGGHCVRCKEWCRLPLITPCRHLLCLDCVSTDNTKCTYPGCGNLYEMQSPDTMARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLIQRLKALQETNKEMSLCTDNINDETHPENSFPLNVRDAKSLIQKFSTSGTKTNSVSEKVLIFSQFLEHIHVIEQQLTVNGIKYTGMYSPMHSCNKKKSLAMFQHDSSCMVLLMDGSAALGLDLSFVSHVFLMEPIWDRSLEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQDADKCRRSPIKDAVKSEDDSGGRGYRSLHDFAGSSYLQKLRFVHTNSES* 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4182 1327 Pfam CW-type Zinc Finger 538 581 IPR011124 GO:0008270
Lja3g4182 1327 Gene3D - 1067 1309 IPR027417 -
Lja3g4182 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1308 IPR027417 -
Lja3g4182 1327 SMART helicmild6 1171 1253 IPR001650 -
Lja3g4182 1327 CDD SF2_C_SNF 1157 1263 - -
Lja3g4182 1327 SUPERFAMILY F-box domain 233 275 IPR036047 GO:0005515
Lja3g4182 1327 Pfam Helicase conserved C-terminal domain 1152 1253 IPR001650 -
Lja3g4182 1327 ProSiteProfiles F-box domain profile. 236 288 IPR001810 GO:0005515
Lja3g4182 1327 PANTHER OS01G0952200 PROTEIN 68 1312 - -
Lja3g4182 1327 Gene3D - 697 891 IPR038718 -
Lja3g4182 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 366 IPR027417 -
Lja3g4182 1327 ProSiteProfiles Zinc finger CW-type profile. 533 584 IPR011124 GO:0008270
Lja3g4182 1327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 692 847 IPR014001 -
Lja3g4182 1327 SMART ultradead3 280 858 IPR014001 -
Lja3g4182 1327 Gene3D - 529 582 - -
Lja3g4182 1327 MobiDBLite consensus disorder prediction 436 458 - -
Lja3g4182 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 887 IPR027417 -
Lja3g4182 1327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1141 1299 IPR001650 -
Lja3g4182 1327 Gene3D - 236 277 - -
Lja3g4182 1327 Pfam F-box domain 240 279 IPR001810 GO:0005515
Lja3g4182 1327 SMART fbox_2 242 282 IPR001810 GO:0005515
Lja3g4182 1327 ProSitePatterns Zinc finger RING-type signature. 1025 1034 IPR017907 -
Lja3g4182 1327 CDD DEXDc_SHPRH-like 713 888 - -
Lja3g4182 1327 Pfam SNF2-related domain 287 945 IPR000330 GO:0005524|GO:0140658
Lja3g4182 1327 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 68 1312 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4182 717 1273 RAD5 or RAD16-like Gene Family AT5G22750 26.644 3.10e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja3g4182 SNF2_N 2e-96 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4182 - - gmx:100803102 2023.44