Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4164 ATGGAAAAAGTGGAAAAGAGGGAGTTTTCTGAATTGCTGTCTGAGCTAATAGTTTTGGCTGATGAGGTTGCTTCTTCTGCTAAGAACTCTGAAATTGAGGTTGATGTTTTTGCTGAATTTGCCATGTTTGTTGAGAAATTCCCACCAATTTTGGATGACTTGAGGGGCAAAAGCACAGTCTTGGACAAGCCATCGATTCGAAAATCGTTGGAATATCTTGAGAATGAGCTAAGGCGGGCTAAAGATTTAACAAAAAGTTCCAATTTGAGACAGCCCGTCAAGCAAATTGAGGATATAACACACGATATTGGTCGGTCGCTGGGGCTTCTACTTGTAGCCAGCCATGAAGTGTCAATGGATTTTAGAGAAAAGATTGGTATGTTGCAAAGACAGTTGATGAATGCAAGATTTTATGGCAATTCGAGCATAACTTCAAGTCCGAAATCAGAGCTTTTCAGCATTGACTTGAAGGGGAATTGGGAAATAGAAGAGGAAATAGTTAATGTTTCTATTCATGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTGCATTTTCAAGACTGAAGGAGTTCTTGAGGAGTGAAAAGCTGGATGGAGGTTTGATTAACGAGAAAGCAACTATTGCCATTCTTTTCAAACGTCTAGGTTCATGTAAAGCACACAACAGGCTTGCCATCATTCGATTGCTAAGAAGTATTGCTTTTGGAAATGACGCACAAAAGGAAAAGATGGCAGATATTGAGTTTTTGTCAGCATTGGTGAAGTCTCTGACCAGAGATTCAGAAGAGAGGATGGAAGCTGTGGGGCTGTTGCTGGACCTCTCTGACCTTCCAGCAGTTCGAAGACGGATTGGAAGAATTCAAGGGTGCATTGTTATGTTAGTTGCCATCCTTACTGGGGATGACCATGTTGCTTCACATGACGCTGCAAAGTTGTTGGATATGTTGTCTAGTAATACTCAAAACGCTCTTCATATGGCTGAGGCTGGCTACTTTGCGCCACTAGTGCAGTATTTGAAGGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCGCGATTGGAGCTCACTGACCACAGCAAACTTGCCCTTGGAGAAGATGGGGCGATTGAGCCCCTTGTCAAAATGTTTAGTACTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTACAAAATCTGTCGAGCTTGACAGAAAATGTGCAACGGTTGATCAGATCTGGAATCACGGGATCTCTGCTACAACTTCTTTTCTGTGTGACATCTGTGCTCATGACTCTGAGGGAGCCTGTATCAGCTATTCTTGCAAGGATTGCTCAATCAGAATCCATCCTTGTTAATGAAGACGTGGCTCAACAGATGTTTTCACTTTTGAATCTTTCGAGCCCGGTAATTCAAGGCCATCTACTAGAAGCTCTAAATAGCATGGCTTCACATCCCGGTGCATCCAAATTGAGAAGAAAAATGAAGGAAAAAGGTGCACTTCAGTTACTCTTACCCTTTCTGAAGGAAAATAACACCCAAATCCGGAGCAAGGTCTTGCAGTTGCTGTACACACTCTCTAAAGATCTAACCGATGAATTGACCGAATATCTCGATGAAACTCATCTTTTCAACATTGTTAATATTGTCTCGTCATCGACATCCGAGAGTGAAAAAGCTTCTGCTGTTGGCATACTCAATAACCTTCCTGCTAGTGATAGAAAAGTGACAGATATACTGAAGAGGGAAAATTTGCTACCTATTTTGATATCCATCGCGTATTCTAACGCTGGAAGTAATTCTCCCACAACAACTAGTTTAACTGAGAGTGTTGCAGGTGTTTTACTCCGCTTCACAAGTTCCTTTGATAAGAAACTACAACTTCTTTCAGCCGAACTCGGGGTGATTCCTTTGCTTGTAAAATTACTCTCAAGCGGTTCACCAATCACGAAATCAAGGGCTGCAAAATCTCTAGCACAACTATCACAGAATTCTCTGTCTCTAAGGAAATCTCGAAAGTCGAGATGGATATGTGTTTCCCCCTCAGTGAATGCATATTGTGAAGTTCATGATGGCTATTGCTTTGTCAATAGAACATTTTGTTTAGTCAAGGCAGGTGCTGTTTCTCCACTCATCCAAATACTGGAAGATAAGGAGAGAGAAGCAGTTGAAGCTGCTCTGAGTGCCCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTCCATTGCCAATTTTTCAGGTGTGCAGGCTATTATAAAAAGTCTAGAAGTTGGGGATGCAAAGGTTCAAGAAAAAGCACTGTGGATGCTGGAGAGAATATTCAGGGTTGAAGAACATAGAGTGAAATATGGAGAATCTGCTCAGATGGTTCTTATTGATTTGGCCAAGAAGAGCAATGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCAGAGCTGGAGCTCTTGCAAGCTCAATCAAGTTACTTTTGA 2496 0.4151 MEKVEKREFSELLSELIVLADEVASSAKNSEIEVDVFAEFAMFVEKFPPILDDLRGKSTVLDKPSIRKSLEYLENELRRAKDLTKSSNLRQPVKQIEDITHDIGRSLGLLLVASHEVSMDFREKIGMLQRQLMNARFYGNSSITSSPKSELFSIDLKGNWEIEEEIVNVSIHDVVLQLKNGNDEEFAVAFSRLKEFLRSEKLDGGLINEKATIAILFKRLGSCKAHNRLAIIRLLRSIAFGNDAQKEKMADIEFLSALVKSLTRDSEERMEAVGLLLDLSDLPAVRRRIGRIQGCIVMLVAILTGDDHVASHDAAKLLDMLSSNTQNALHMAEAGYFAPLVQYLKEGSDMNKILMATALSRLELTDHSKLALGEDGAIEPLVKMFSTGKLESKLSALNALQNLSSLTENVQRLIRSGITGSLLQLLFCVTSVLMTLREPVSAILARIAQSESILVNEDVAQQMFSLLNLSSPVIQGHLLEALNSMASHPGASKLRRKMKEKGALQLLLPFLKENNTQIRSKVLQLLYTLSKDLTDELTEYLDETHLFNIVNIVSSSTSESEKASAVGILNNLPASDRKVTDILKRENLLPILISIAYSNAGSNSPTTTSLTESVAGVLLRFTSSFDKKLQLLSAELGVIPLLVKLLSSGSPITKSRAAKSLAQLSQNSLSLRKSRKSRWICVSPSVNAYCEVHDGYCFVNRTFCLVKAGAVSPLIQILEDKEREAVEAALSALSTLLQDEIWEGGVNSIANFSGVQAIIKSLEVGDAKVQEKALWMLERIFRVEEHRVKYGESAQMVLIDLAKKSNDSRLKSTVAKVLAELELLQAQSSYF* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4164 831 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 1 831 - -
Lja3g4164 831 Gene3D - 183 309 IPR011989 -
Lja3g4164 831 SUPERFAMILY ARM repeat 173 426 IPR016024 -
Lja3g4164 831 SUPERFAMILY ARM repeat 372 785 IPR016024 -
Lja3g4164 831 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 831 - -
Lja3g4164 831 Gene3D - 314 677 IPR011989 -
Lja3g4164 831 SMART arm_5 242 281 IPR000225 GO:0005515
Lja3g4164 831 SMART arm_5 576 623 IPR000225 GO:0005515
Lja3g4164 831 SMART arm_5 491 531 IPR000225 GO:0005515
Lja3g4164 831 SMART arm_5 324 364 IPR000225 GO:0005515
Lja3g4164 831 SMART arm_5 698 738 IPR000225 GO:0005515
Lja3g4164 831 SMART arm_5 742 782 IPR000225 GO:0005515
Lja3g4164 831 SMART arm_5 626 666 IPR000225 GO:0005515
Lja3g4164 831 SMART arm_5 365 405 IPR000225 GO:0005515
Lja3g4164 831 Gene3D - 695 828 IPR011989 -
Lja3g4164 831 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4164 Lja-Chr3 81332743 81336934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4164 160 831 U-box Gene Family AT1G76390 28.112 1.81e-44 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4164 K08332 - gmx:100791453 1270.76