Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4148 ATGAAAGGTAGAGCAATTTCTCCATGGACCTTTGTACATAGTGTTTCTTTTTCAGTTTCTCTGATGAAGTTATCTTTTGGATTAGGTTCACCATATGCATGGCTCAAAGATATGAATGAAGAAGATAGGGGAAAATACCTGGCTCGTATTATTAATGCCTGTGCTATGTTTATTGAGTCAGGAAGCATTGAATATGCAGATAATGCGCTGGAGTATCTTGCTCACATCGCTTCCCCTTATGGTGATGCAATGCAGAGGGTAGCCACCTATGTCAGTGAGGGACTAGCTTTCCAAGTGCTGAAAAATCTGAAAGGTGTACCTAAAGCTCTAAGTTTGCCAAAAACATTGTCAACCTCTGAAGAACTATTAGTAAAGAATTTATTCTTTCAGTTTTATCCATTTTTGAAGATTGCTTATGTGATCTCAAGTCATGCCATTGCTGAAGCCATGAAAGGGGAAGAAGTGATCCATTGGATTTACCTCATGCAGAGGTTAAAAGAACAACAAAAGAAGCCACTACTTCTGAAAATTACAGCCATTCATGAGAAGAAGGAAGTTTTAGAGCAAATGGCCCTTCACTTGGGAGTTGAAGCTCAAAAGTTTAATTTCCATCTCCAATTCAATGCTATTGTGAGCTCTCTGGAGAATCTTGACCTTGAAAGTTTGCCTGTGGAGAAAGGAGAGCCTCTTGCAATTAGCTCAGTGCTTCAGCTTCACTCTCTTCTGGCCACTGATGATTCAATGTCCAGCTGCAGGAACCCCCCATCGGAATCAATGAATCAAAGCACATTTAAGGAGGTCCTTGGGAAAAAAAAGATCAACCAGAGTTCTGGTTCATCTCTGTTATCATTTCCTATATGTGCTTCTTCACCCAAGATGGAAGGATTTCTAAATGGCCTCAGGAAGCTCCAACCTAGACTGGTGGTGATTACTGAACAAGAGTCCAATGTCAATGGTTCTTCTTTGACAGAAAGGGTTGACAAAGCATTGGACTTTTATGGGGCATTGTTCAAATGCTTGGAATCAACTTTTTTAGGAACAGCTGTGGAGAGAATCATGCTGGAGAGGACTTTATTAGGGGATGAAATAAAGAACATTGTTGCATGTGAAGGGGTTGAGAGAAAAGAGAGGCATGAGAAACTTGAGACTTGGATCCCAAGGCTTGAATTGGCTGGGTTTGGGAGGGAAACTATCAGATATGACTGGATGATGCAGGCAAAAAAGGAATTACAAGGCTATGGAAATGGATATAAGCTTCTTCAAGAAAATAAATGTTTGTTTGTGTGTTGGAATGATAAGCCACTCTTTTCTGTGTCAGCCTGGAAGGTCTATTGA 1335 0.4052 MKGRAISPWTFVHSVSFSVSLMKLSFGLGSPYAWLKDMNEEDRGKYLARIINACAMFIESGSIEYADNALEYLAHIASPYGDAMQRVATYVSEGLAFQVLKNLKGVPKALSLPKTLSTSEELLVKNLFFQFYPFLKIAYVISSHAIAEAMKGEEVIHWIYLMQRLKEQQKKPLLLKITAIHEKKEVLEQMALHLGVEAQKFNFHLQFNAIVSSLENLDLESLPVEKGEPLAISSVLQLHSLLATDDSMSSCRNPPSESMNQSTFKEVLGKKKINQSSGSSLLSFPICASSPKMEGFLNGLRKLQPRLVVITEQESNVNGSSLTERVDKALDFYGALFKCLESTFLGTAVERIMLERTLLGDEIKNIVACEGVERKERHEKLETWIPRLELAGFGRETIRYDWMMQAKKELQGYGNGYKLLQENKCLFVCWNDKPLFSVSAWKVY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4148 444 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 443 IPR005202 -
Lja3g4148 444 Pfam GRAS domain family 49 442 IPR005202 -
Lja3g4148 444 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 18 443 - -
Lja3g4148 444 ProSiteProfiles GRAS family profile. 38 442 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4148 Lja-Chr3 81123362 81124823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4148 30 442 GRAS Transcription Factor Family AT1G50420 43.341 1.06e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g4148 GRAS 4.6e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4148 - - gmx:106798410 423.705