Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4147 ATGGAGTCAGGTTCACCATATCAGTGGATGAGGGAGCTGAGATATGACTCCCAAGGATTAAAAAACCCAATAAGCCTTCTTATTGAGTGCGCTAAATGCGTCGCATCTGGAAGCATCAAGAATGCAGATATAGGACTTGAGCTCATTTCTCAGATTTCATCTCCTGATGGTGATGCAGTGCAAAGGATGGTCACTTATTTCAGTGAAGCACTTGGTTACAGGATAGTCAAACATTTACCTGGTGTATACAAAGCTCTCAATTCCTCGAAAACATCATCGTCTTCAGAAGACTTCCTTGTTCAGAAATACTTCTATGAACTTTGCCCCTTCCTGAAGTTTTCATACCTGATCACAAACCAAGCAATTGTAGAAGCTATGGAAAGTGAAAACTGGGTTCACATCATTGATCTTCATTGTTCTGAACCAGCTCAGTGGGTGAATCTTCTACTAACATTAAAAAACCGCCATGGAGGCCCGCCCCATCTAAAAATCACAGGTATTCATGAAAAGAAAGAGGTATTAGACCAAATGAGTCTTCACTTGACAGCTGAAGCTGGGAATTTGGATTTCCCTTTACAGTTTAATCCAATTGTTAGCAAACTGGAAGATGTTGACTTTGAAAACTTGCCTGTGAAGACAGGTGAAGCTCTTGCAATCACTTCAGTTCTTCAGCTTCATTCTCTTCTTGCCACGGACGATGACATGAGTGGGAAGTTCTCGCCAGCCGGAGCGGCATCTATGAACCTGCAGAGAGCAGTGCACATGGGCCAGAGGACTTTTGCTGAGTGGCTTGAGAGAGACATGATCAATGCATATATTTTAAGTCCTGATTCTGCTTTGTCTCCTCTTTCTTTCGGTGCCTCGCCTAAGATGGGGGTCTTTCTCAATGCGATGCGGAAGCTCCAGCCGAAACTGATGGTGATCACTGAGCAAGAATCGAATCTAAATGGTTCCAATTTGATGGAGCGGATTGATAGATCATTGTATTTTTACAGTGCACTTTTTGACTGCTTGGATTCTACTGTGATGAGAACTTCAGTGGAGAGGCAAAAACTTGAGAGCATGCTTCTGGGGGAGCAGATCAAGAACATCATTGCTTGTGAGGGAGTTGATAGAAAGGAGAGGCATGAAAAACTCGAGAAATGGATTCGGAGGCTCGAATTGGCGGGGTTTGTGAAGGTTCCTTTGAGCTACAATGGTAGGATTGAAGCTAAGAGTCTGTTGCAGAGATATGGTCATAAGTACAAGTTTAGAGAAGAGAATGATGGTTTGCTTATCTGCTGGAGTGATAGGCCACTGTTTTCTGTATCAGCATGGAGTTTCAGGAAATGA 1332 0.4317 MESGSPYQWMRELRYDSQGLKNPISLLIECAKCVASGSIKNADIGLELISQISSPDGDAVQRMVTYFSEALGYRIVKHLPGVYKALNSSKTSSSSEDFLVQKYFYELCPFLKFSYLITNQAIVEAMESENWVHIIDLHCSEPAQWVNLLLTLKNRHGGPPHLKITGIHEKKEVLDQMSLHLTAEAGNLDFPLQFNPIVSKLEDVDFENLPVKTGEALAITSVLQLHSLLATDDDMSGKFSPAGAASMNLQRAVHMGQRTFAEWLERDMINAYILSPDSALSPLSFGASPKMGVFLNAMRKLQPKLMVITEQESNLNGSNLMERIDRSLYFYSALFDCLDSTVMRTSVERQKLESMLLGEQIKNIIACEGVDRKERHEKLEKWIRRLELAGFVKVPLSYNGRIEAKSLLQRYGHKYKFREENDGLLICWSDRPLFSVSAWSFRK* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4147 443 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 4 441 - -
Lja3g4147 443 ProSiteProfiles GRAS family profile. 14 440 IPR005202 -
Lja3g4147 443 Pfam GRAS domain family 24 439 IPR005202 -
Lja3g4147 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 441 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4147 Lja-Chr3 81118970 81120801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4147 1 443 GRAS Transcription Factor Family AT1G50420 51.982 1.03e-156 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g4147 GRAS 5.2e-120 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4147 - - lja:Lj3g3v0821290.1 852.047