Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4128 ATGGGTCGTGGGCGTAGGAAGATTGAGATCAAAAGGATTGAGAATGTGAAGAACAGACTAGCCACATTTTCAAAGAGGAGAAGCGGGTTGTTGAAGAAGGCTAAGGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTGTCATTGTGTTTTCCAACACTGGAAAGCTCACCGAGTTCTCAATTTTCCATAACTTGTTAGTTTCAAAAAAAAAAAAAAAAACTTGTTTTTCCCCTTTCAAATATTCCTCTGTTCTGATTTTTTTATTCTTTAAAAAAAGTCATTTTTTATTTAGGATATTTGAAATTGTTGTGGGGCAATTGCCCCCTCCTCTACCACATAGATCCGTCCTTTTGTTGGGTAAGGACTTGACAGCTTTGGGATTAAAGGAATTGCAAAGTTTAGAACAGCAACTTAATGAAGGGTTATATTCTGTCAGAGAGAGAAAGGAGGAACTACTCATGAAGAAACTGGAGCAGTCTAGATTACAGGAACAAAGGGCTATGTTGGAAAATGAAGTTTTGCGCAAACAGGCATACATTATTCTCTTATTCTTCTTAATGCAACTATCAGAACAGAGAAATAGTGCTTTTGCAAACACCAGTTCCTCACATCCCAACTTGGCCACTAGCTGCGGAAATGAGAAAGGAAGTTCATACATTGCATTGGGCATGTTTGAATTAACATCTCTTTCATCAGAATCAATTATGAAACTGAAAAGTTACTCATAG 729 0.3772 MGRGRRKIEIKRIENVKNRLATFSKRRSGLLKKAKELSVLCDAEVAVIVFSNTGKLTEFSIFHNLLVSKKKKKTCFSPFKYSSVLIFLFFKKSHFLFRIFEIVVGQLPPPLPHRSVLLLGKDLTALGLKELQSLEQQLNEGLYSVRERKEELLMKKLEQSRLQEQRAMLENEVLRKQAYIILLFFLMQLSEQRNSAFANTSSSHPNLATSCGNEKGSSYIALGMFELTSLSSESIMKLKSYS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4128 242 ProSiteProfiles K-box domain profile. 90 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g4128 242 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Lja3g4128 242 CDD MADS_MEF2_like 4 60 IPR033896 GO:0000977|GO:0045944
Lja3g4128 242 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Lja3g4128 242 Pfam K-box region 118 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g4128 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
Lja3g4128 242 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Lja3g4128 242 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Lja3g4128 242 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Lja3g4128 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 224 - -
Lja3g4128 242 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Lja3g4128 242 ProSitePatterns MADS-box domain signature. 5 59 IPR002100 GO:0003677|GO:0046983
Lja3g4128 242 Coils Coil 152 172 - -
Lja3g4128 242 PANTHER MADS BOX PROTEIN 1 224 - -
Lja3g4128 242 SUPERFAMILY SRF-like 4 60 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4128 Lja-Chr3 80822840 80826507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4128 1 185 MADS-box Gene Family AT5G13790 51.892 8.13e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja3g4128 K-box 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4128 - - gmx:547732 181.03