Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4124 ATGGGAAGAGCAAGTTGTTGTTTGATTCTTCTAAGCTTCCTCATTGTGACCATCTTTGTGGGTGAAATCCATGGAAGCAAACAGGGTAGAGCTCTTGACAAATTGCAAAAGGCCAAGATCAAGGGAAGTTCAGGAATTGATGTGAGTCTTTTTCAGGCACAAGAAGTTCATGCTGCTGTGGTTCATAATTCTCAAGATGGTTTGAAAGGGAGAGATAGAATTGAGAAGCTTCCAGGTCAACCTGAGGTGAAGTTTGATCAATATGGAGGGTATGTCACTGTGGACAAATCTGCAGGACGTGCTTTTTACTATTACTTTGTGGAAGCTCAACGTTCTTCAGAAAAGATGCCTCTTCTACTTTGGCTCAATGGAGGTCCTGGATGTTCATCTCTTGCCTATGGAGCAATGCAAGAACTTGGACCCTTCCGTGTAAACAGTGATGGGAAAACACTCCACATAAACAGATACTCATGGAACTATGCTGCAAATGTTCTGTTCCTGGAGTCACCAGCAGGAGTAGGATTTTCATACTCAAACAAATCATCTGATTATGAAACCAATGGGGACAGAAAAACAGCTGCAGATAACTACGTTTTCTTAGTGAATTGGCTAGAGAGGTTTCCAGAGTACAAGAACAGAGATTTCTACATTGCAGGGGAGAGCTATGCTGGGCACTATGTCCCTCAACTTGCACACAACATTCTCTACCATAACAAAAAGGCTAACAAGACAATCATCAACCTCAAAGGAATTATGATTGGGAATGCAGTGATCAATGACAAAACAGATAACCAAGGAATGTATGATTTTCTTGCAAGCCATGCAATAATCTCAGATGAAGCAGCACATGATATCACCAAATATTGTAATTTCTCAGCTATCAATCAGACTAGTGAGTGCAACGCAGCAGTAGATGAAGCTAGCAACGATACCTCGTTCATTGACATCTACAACATCTATGCTGCACTCTGCAATAATCCCAACCTCACTACTCATCCCAAGAAGAACTCGATTGTTATTGATCCCTGTAGTGATAATTATGTATATGCATATCTTAACCGGGGTGATGTTCAAGAGGCCCTCCATGCAAATGTCACCAAACTCAAATATGACTGGGAGCCTTGCAGTGACATCATTGCAAAGTGGGCTGATAGCCCTTCAACAGTCATTCCCCTTTTACATGAATTCCTGAACAATGGACTCAGGGTTTGGATTTTTAGTGGTGATACAGATGGAAGAGTGCCTGTTACTTCAACCAAGTATTCCATTAAAAAGATGAACCTTTCCACTACAACTACTTGGCATCCTTGGTTCATAAATGGAGAGGTTGGTGGGTACACTCAAGTATACAAGGGAGGTCTAACTTTTGCCACAGTGAGAGAAGCAGGACATCAAGTGCCAAGTTACCAGCCATTAAGAGCTCTTTCTCTAATCAAACATTTCTTAGATGGCACTGCTCTTCCTAATACTCACAGATTTGACTAA 1485 0.4155 MGRASCCLILLSFLIVTIFVGEIHGSKQGRALDKLQKAKIKGSSGIDVSLFQAQEVHAAVVHNSQDGLKGRDRIEKLPGQPEVKFDQYGGYVTVDKSAGRAFYYYFVEAQRSSEKMPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHINRYSWNYAANVLFLESPAGVGFSYSNKSSDYETNGDRKTAADNYVFLVNWLERFPEYKNRDFYIAGESYAGHYVPQLAHNILYHNKKANKTIINLKGIMIGNAVINDKTDNQGMYDFLASHAIISDEAAHDITKYCNFSAINQTSECNAAVDEASNDTSFIDIYNIYAALCNNPNLTTHPKKNSIVIDPCSDNYVYAYLNRGDVQEALHANVTKLKYDWEPCSDIIAKWADSPSTVIPLLHEFLNNGLRVWIFSGDTDGRVPVTSTKYSIKKMNLSTTTTWHPWFINGEVGGYTQVYKGGLTFATVREAGHQVPSYQPLRALSLIKHFLDGTALPNTHRFD* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4124 494 SUPERFAMILY alpha/beta-Hydrolases 75 487 IPR029058 -
Lja3g4124 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 166 IPR001563 GO:0004185|GO:0006508
Lja3g4124 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 177 IPR001563 GO:0004185|GO:0006508
Lja3g4124 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 454 467 IPR001563 GO:0004185|GO:0006508
Lja3g4124 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 203 228 IPR001563 GO:0004185|GO:0006508
Lja3g4124 494 ProSitePatterns Serine carboxypeptidases, serine active site. 217 224 IPR018202 GO:0004185
Lja3g4124 494 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 488 IPR001563 GO:0004185|GO:0006508
Lja3g4124 494 Gene3D - 343 379 - -
Lja3g4124 494 PANTHER CARBOXYPEPTIDASE 10 488 - -
Lja3g4124 494 Gene3D alpha/beta hydrolase 69 326 IPR029058 -
Lja3g4124 494 Pfam Serine carboxypeptidase 79 484 IPR001563 GO:0004185|GO:0006508
Lja3g4124 494 Gene3D - 389 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4124 Lja-Chr3 80789835 80796249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4124 351 487 Calmodulin-binding Proteins AT2G22960 30.657 8.18e-15 70.9