Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4119 ATGGATTCTTCTGTGACCGGTGTTGGTGGCTCTAGCAACAATGGCACTCAGAATTCAGGATACAGAAAAAGAAGCTACACTCGTCTTAGCTCCACTCAAAGAAAGATACTTCAAGATTTCTTCAATGAATGCTGTTATCCTAAAGATGCCAAACGACGTGAACTAGCTGCAGAGGTTGGGCTAGATCCAAAGCAGGTTAAGTATTGGTTCCAGAATAAGAGACTACAACACAAGAGTCAATGCGCACGAGCAGATAGTAGTGCTCTTCGAGTTGAGAATGAAAGGGTTCAGAAAGAAAACCTCATATACAGAGATGAACTGAAGAAGATTTTTTGCACAGATTGTGGGGTTCCACTGTTTCCTCAAGAAAAGCATGAACATTTCATGCAACAGATGAGTCTTGAAAATTCTCAGCTAAAAGATAAGGCTATTACTAACTGTCTTCAAAGTCTCATGGGGAGTCAAGTGTCACAACAAGAGCTGCAACAAGGGCTTATTCCCATCATTGGATCTTCACATGACCCATCACTTGCAAGTTTGTTGAACCAAGGGGCTGGTGGAATTCGAAGTTCAAGTATTGGTTTGACATCAATTATCGGTGGTGACAGTGCATCATTGCACAATAATCCAATGGAGGAAAGTCTAGATTTTCAGAATCAGAAGTTACTGATGAAGGGTATTGCAAGTACTGCAACGAGAGAACTGGCTAAGCTTCTGCTCTACAATGAGCCCTTTTGGGTCCTCTCTTCATCCCAAGAAGGGAAACTCACTCTTCATCCTGAAATATATGAGATATTTTTTCCTAAGAACAAACACTTCATTGGTCCCAACGTGCGTGCAGAATCATCAAAAGATTCAGTGACAGTCAACATATCTGGAATGCAACTTGTTGAGATGTTTCTTGATCCGGTCAAATGGGCTAACCTTTTCCCATCGATTCTTGCTAAAGCAGAAACAATCAAAGTGTTTGATAGCGGTTTGTCAAGCAATCAAAATGGAGCTTTGTTGTTGATGTGTGGGGAAATGCACGTTCTTTCACCTTTAGTGCAACCTCGCAAATTTCATTTTCTTCGCTATTGTGAGCATGTTAAGGCTGGTTTGTGGATGATAACAGATGTGTCAGTTGATCCCTCTAGACAACACAACCCTTTTTCTCGCTCTTGGAAACATCCATCTGGATGCATGATTCAGGAAATACCTGATGGGAGTTGCAGGGTTTTCTGGGTGGAACATGTGGAAGTGGATGAGATGCAAACACACCAGCTGTTTAGAGATCTGGTTGATACCAAGATTATATATGGAGCTGAAAGATGGACAAAGGAGCTCCAAAGGATGTGTGAGAGATTTACTTGCTTTTCTGAAGATAAGACACAGGATCATGACCATAGAGGAGTGATCTGTTCGAATGAAGGGAAGAGAAGCGTGATGAACCTCGCTTGTCGAATGGTTAAGATGTTCTGTGAAAGTTTATCCATGACAGGTTATGAGATGAACTTCCCATCTTCAAATATGGAGAATACTAGCGGGATTAAGTTCTCTGTTCGCAAAAACACTGAAATGGGCCAACCATCTGGCACGGTTGTTGTGGCTACCACAACCCTTTGGCTTCCTCACCATTATCAGAAAGTTTTTGAGTTTTTAACTGATATTTCTAAACGCTCTCAGTGGGATGTTCTTGCGGCTGAACATTCAGTGCATGAGATAGGAAACATTTTAGTCGGAGCTAATCCTGGCAACTATATATCACTTATCCAGCCATTGATGTCCAATACCGAGAACAACATGGTGATTTTGCAAGAGTGTTCTATGGATCCTATGAGATCGTATATTGTATTTGCACCAGCTGATATACCAGCTATGAATGCGGCAATAGGAGGCGGAGACACTTCAATGATACAAATTCTCCCATCAGGTTTTGTGATCTCGACAGATGGCCAAACAAATATTGAGAACTCAAGAGGGTCTTTGCTGACAGTGGCATTTCAAATACTTGTGAATAGTCTGACTGCAGATGAACTCCCAGTACTAGATGTGGGAAATGCGGGAGATGTTTTAACCCTTTTGGACTCAATAGTCGAGAATATACATAGTGCTCTAAGCAGTTATTAA 2109 0.4154 MDSSVTGVGGSSNNGTQNSGYRKRSYTRLSSTQRKILQDFFNECCYPKDAKRRELAAEVGLDPKQVKYWFQNKRLQHKSQCARADSSALRVENERVQKENLIYRDELKKIFCTDCGVPLFPQEKHEHFMQQMSLENSQLKDKAITNCLQSLMGSQVSQQELQQGLIPIIGSSHDPSLASLLNQGAGGIRSSSIGLTSIIGGDSASLHNNPMEESLDFQNQKLLMKGIASTATRELAKLLLYNEPFWVLSSSQEGKLTLHPEIYEIFFPKNKHFIGPNVRAESSKDSVTVNISGMQLVEMFLDPVKWANLFPSILAKAETIKVFDSGLSSNQNGALLLMCGEMHVLSPLVQPRKFHFLRYCEHVKAGLWMITDVSVDPSRQHNPFSRSWKHPSGCMIQEIPDGSCRVFWVEHVEVDEMQTHQLFRDLVDTKIIYGAERWTKELQRMCERFTCFSEDKTQDHDHRGVICSNEGKRSVMNLACRMVKMFCESLSMTGYEMNFPSSNMENTSGIKFSVRKNTEMGQPSGTVVVATTTLWLPHHYQKVFEFLTDISKRSQWDVLAAEHSVHEIGNILVGANPGNYISLIQPLMSNTENNMVILQECSMDPMRSYIVFAPADIPAMNAAIGGGDTSMIQILPSGFVISTDGQTNIENSRGSLLTVAFQILVNSLTADELPVLDVGNAGDVLTLLDSIVENIHSALSSY* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4119 702 Pfam START domain 228 448 IPR002913 GO:0008289
Lja3g4119 702 SUPERFAMILY Bet v1-like 221 449 - -
Lja3g4119 702 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g4119 702 Gene3D - 227 447 IPR023393 -
Lja3g4119 702 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 700 IPR042160 -
Lja3g4119 702 SMART START_1 226 448 IPR002913 GO:0008289
Lja3g4119 702 Gene3D - 1 79 - -
Lja3g4119 702 ProSiteProfiles START domain profile. 217 451 IPR002913 GO:0008289
Lja3g4119 702 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Lja3g4119 702 CDD homeodomain 23 80 IPR001356 GO:0003677
Lja3g4119 702 SMART HOX_1 22 84 IPR001356 GO:0003677
Lja3g4119 702 Pfam Homeodomain 23 78 IPR001356 GO:0003677
Lja3g4119 702 SUPERFAMILY Homeodomain-like 16 82 IPR009057 -
Lja3g4119 702 CDD START_ArGLABRA2_like 221 447 - -
Lja3g4119 702 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 700 - -
Lja3g4119 702 SUPERFAMILY Bet v1-like 470 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4119 Lja-Chr3 80719242 80731554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4119 22 700 Homeobox Transcription Factor Family AT1G73360 38.770 8.44e-152 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g4119 START 3.4e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4119 K09338 - gmx:100795075 643.654