Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4118 ATGGATGCTGAAAATTATGATGATGGTTATGATGGAGGTTTTGAAGAATATTTAGAGGAGGGTGATGAAGATTTTGGGTTGGTGCCTGCAGCTGCGGCATCAATTGAGGAGTTGGAGATGCAAGAAGAGTACCAGCAAGAAGGAAATTGTGCGATTTGTTTTGAAGATTTTCATGTTGGTGTTCGAATGCCTTGTTTACACATGTTTCATAGGAATTGTATCACTAGTTGGTTGCAAGTGGCCAATTCTTGCCCCTTGTGTCGGTTTCAGATGCCTATTACTATTAATGATGAACAAAATTAG 303 0.396 MDAENYDDGYDGGFEEYLEEGDEDFGLVPAAAASIEELEMQEEYQQEGNCAICFEDFHVGVRMPCLHMFHRNCITSWLQVANSCPLCRFQMPITINDEQN* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4118 100 Pfam Ring finger domain 49 88 IPR001841 -
Lja3g4118 100 ProSiteProfiles Zinc finger RING-type profile. 50 88 IPR001841 -
Lja3g4118 100 SUPERFAMILY RING/U-box 40 94 - -
Lja3g4118 100 PANTHER F6A14.12 PROTEIN-RELATED 16 92 - -
Lja3g4118 100 SMART ring_2 50 87 IPR001841 -
Lja3g4118 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 99 IPR013083 -
Lja3g4118 100 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 16 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4118 Lja-Chr3 80694957 80695259 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4118 9 97 C3H Transcription Factor Family AT5G01980 36.458 1.51e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4118 - K11982 lja:Lj3g3v0826180.1 115.931