Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4116 ATGGTGGAATCTCGCTCCCCTAAGCGCCACAAAATCACAAGGGGAGAAGATGATTATATGCCTGGAAATATTCTTGAGATTGAGCTTTCTAATTTCATGACTTTTGATTACTTAAAATGTAAACCTGGTCCCCGATTGAATCTTGTAATTGGACCTAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCGGCGGAGAGCCCCAGCTGCTTGGGAGAGCTACAAAGATTGGGGAATATGTAAAACGGGGAGAAGATTCCGGCTTCATTAAGGTTACCTTGAGAGGGGATCATAAAGAGGAGCGCATTACCATTACGCGGCAAATAAATGCTTACAACACGTCCGAATGGTTGTTCAATGGAAATGTAGTTCCCAGAAAGGATGTGGTTGAAACCATTCAGAAGCTTAACATCCAAGTCGATAATTTGACTCAATTTTTACCGCAAGACAGGGTATGTCAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACTGAAAAGGCTGTTGGTGATCCACAGCTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGCGCATTGAAGCATATTGAACTGTCTCTTGAGAAAAATGAAGGAACTTTAAAACAATTGAAGGAACGTAATGCTGAATTAGAGAAGGATGTTGAACGCGTTCGTCAGAGAAATGAGCTTCTTGCCAAGGCCGAGTCAATGAAGAAGAAATTGCCATGGCTGAGGTATGATATGAAGCAGGTGGAATATGGGGAAGCTAAGATACGTGAGAATGATGCAGCAAAGGCATTGGAGGAAGCTGATAAGTTATTAAGTGATCTTAAAGAGCCCATTAAGAAACAAAAAGAGGAGAAGGATGCATTAAATGTAAAATGTAAAACGGTAAGCAGCTGCTTAATTGACAATGGCAATAAGCGAATGGAGCTGAGGGAGAAAGAGAGCCAATTGGATGGGGAATTACAAAGTAAGTACAAAGAAATGGACAATTTGAGGAAGCAGGACAATTCTAGACAAGAAATACTTGAAGAAGCTAGGGAGAAACTTGCTGCTGCTGAAATTGAACTTGAGAATCTACACCCTTTTGTACCTCCGAGGGATGAGCTTGTGAATGTCCCAAATCAGAAACATGCTCAATATCTGGAGGGTCAAGTTGCTCATCACGTTTGGAAGTCTTTCATAACACAAGATTCTGGTGATCGGGACCTTTTAGTGAAAAACCTGAAGTTCTTTGATGTACCGATTCTAAATTATACTGGCGGTGATAACCACCAAAGAAGGCCTTTTGAAATTTCTGAAGATTATATTGGATCTAAAGAAACTGATCAGAAATCTGAGGTGGTTCCAAGATTGGGAATTATGGATTTATGGACACCAGAAAATCACTACCGTTGGTTTGACTCAAGATATGTAAATCATGTCGGCGCAATTGTTCATCATGTGGACCCCCCAAAACTTCTATCTAATACTTCGAACGTGGGAGGAATTGAGAATCTGATTTCCGATGAAAGGGAGCTTGAAGAACGAATTGCTACCTTGGAGGAAAGCATTAAAAGATCTCTAGAAGAGGAAAGGAGATTAAGGAATCAAGTTGCTAGTCTCCATAAACAGCGGGAAGGCATTAACATAACAACGCGGAATGAGCAAGAAAAACGAAAAAAACTCCTTGGCCGGATAGAACAAAGGAAAGCGATACTGAAATCGATAGCGGAGCAGGATGATATGGATACTGAGATAGCAAAGCTTGTTGATCAGGCTGAAAAATATAACATTCAGCGATTTCACAATGCAATTAAAATGAAGGATCTTCTTATTGAAGCTATGGGTTACAGACAGAATGTTGTTGAACTACGTATGTCATTAATCGAATTTGATGCAAAGATTGGAGAGATGGAGGCCAAACTGAAGAAACCTGAGAATTTTGCTCTGCAAGTAAAATTGCATTTTGATGGCTGTAAGAAAGAGACTGAGAATTGTAGACAACAGCTTACTGATTCCTTGAATTATGCTAAATCAATTGCTCGGCTTACACCTGAGCTAGAGAAGGAATTTCTTGAGATGGCGACTACTATAGAGGAATTGGAAGCAGCTATCCAAGATACCACTGCTCAAGCCAATTCAATCCTTTTTGTCAATCATAACATATTGGAACAATACGAGGATCGACAAAGACATATAGAAGATCTTGCAGTAAAACTTGAAGCAGACAAAAACGAAAGTAGAAGGTGTCTAGCTGAATTAGATAACATTAAGGGAAAATGGCTTCCAACACTGAGAAACCTTGTGGCCCAGATAAATGAAACCTTTAGATGTAATTTTCAAGAGATGGCTGTTGCCGGAGAAGTTTCACTAGAAGAGCATGATATGGACTTCGATAAATTCGGAATACTTATAAAAGTCAAGTTCAGAGAAAATAGTCAGCTTCAAATTCTCAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCTATAAATGAAAGGAAGATGTTCCAGCAACTAGTGAGAGCAGCAAGCAAGGCAAACACACCACAGTGTTTCTTGCTTACCCCCAAGTTGCTACCAGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATCGGTCAAGCATCGAAGGTTTGGACCATTGGTGATAGCTGGAGTATTATAACGAGACATGTCGAAGAGAACCTATGTTGA 2793 0.4035 MVESRSPKRHKITRGEDDYMPGNILEIELSNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATKIGEYVKRGEDSGFIKVTLRGDHKEERITITRQINAYNTSEWLFNGNVVPRKDVVETIQKLNIQVDNLTQFLPQDRVCQFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRNELLAKAESMKKKLPWLRYDMKQVEYGEAKIRENDAAKALEEADKLLSDLKEPIKKQKEEKDALNVKCKTVSSCLIDNGNKRMELREKESQLDGELQSKYKEMDNLRKQDNSRQEILEEAREKLAAAEIELENLHPFVPPRDELVNVPNQKHAQYLEGQVAHHVWKSFITQDSGDRDLLVKNLKFFDVPILNYTGGDNHQRRPFEISEDYIGSKETDQKSEVVPRLGIMDLWTPENHYRWFDSRYVNHVGAIVHHVDPPKLLSNTSNVGGIENLISDERELEERIATLEESIKRSLEEERRLRNQVASLHKQREGINITTRNEQEKRKKLLGRIEQRKAILKSIAEQDDMDTEIAKLVDQAEKYNIQRFHNAIKMKDLLIEAMGYRQNVVELRMSLIEFDAKIGEMEAKLKKPENFALQVKLHFDGCKKETENCRQQLTDSLNYAKSIARLTPELEKEFLEMATTIEELEAAIQDTTAQANSILFVNHNILEQYEDRQRHIEDLAVKLEADKNESRRCLAELDNIKGKWLPTLRNLVAQINETFRCNFQEMAVAGEVSLEEHDMDFDKFGILIKVKFRENSQLQILSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKANTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIGQASKVWTIGDSWSIITRHVEENLC* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4116 930 Gene3D - 23 231 IPR027417 -
Lja3g4116 930 Coils Coil 268 288 - -
Lja3g4116 930 Coils Coil 194 235 - -
Lja3g4116 930 Pfam RecF/RecN/SMC N terminal domain 24 871 IPR003395 -
Lja3g4116 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 881 IPR027417 -
Lja3g4116 930 Coils Coil 331 351 - -
Lja3g4116 930 CDD ABC_SMC5_euk 803 905 - -
Lja3g4116 930 Coils Coil 719 739 - -
Lja3g4116 930 Gene3D - 724 901 IPR027417 -
Lja3g4116 930 CDD ABC_SMC5_euk 22 179 - -
Lja3g4116 930 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 371 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lja3g4116 930 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 373 924 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lja3g4116 930 Coils Coil 499 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4116 Lja-Chr3 80665209 80687428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4116 373 930 Structural Maintenance of Chromosomes family AT5G15920 56.081 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4116 K22803 - gmx:100778678 1141.33