Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4115 ATGGCGGAATCTCGCCCCCCTAAGCGCTCCAAAATCACCAGGGGAGAAGATGATTATATGCCTGGAAATATTCTTGAGATTGAGCTTCATAATTTCATGACCTTTGATTACTTAAAATGTAAACCTGCGCCTCGATTGAATCTTGTAATTGGGCCCAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCGGTGGAGAGCCCCAGCTGCTTGGGCGAGCCACAAGTATTGGGGCATATGTGAAACGAGGAGAAGAGTCTGGCTACATTAAGATTACCTTGAGAGGGGACCATAAAGAGGAGCGCCTTATCATTATGCGTAAAATAAATACTAACAACAAGTCTGAATGGTTGTTCAATGGAAATGTAGTACCCAAAAAGGATGTTGCTGAAAGCATTCAGAGGTTTAACATCCAAGTCAATAATTTGACTCAATTTTTACCGCAAGACAGGGTATGTGAGTTTGCGAAGTTAACTCCTGTCCAACTTCTGGAAGAGACTGAAAAGGCTGTTGGTGATCCACAGCTTCCGGAGCAACATCGTGCACTAATTGATAAAAGTCGTGCATTGAAGCATATTGAGCTGTCTCTTGAGAAAAATGAAGGAACTTTAAAACAGTTGAAGGAACGCAATGCCGAATTAGAGAAGGATGTTGAACGCGTTCGTCAAAGAGATGAGCTTCTTGCCAAGGCTGAGTCAATGAAGAAGAAATTGCCATGGCTGAGGTATGATATGAAGCAGGCTGAATATCGGGAAGCTAAGAAACGTGAGAATGATGCTGAAAAGGCATTGAAGGAAGCTGCGAAGTTATTAAGTGATCTTAAGGAACCTATTAAGAAACAGAAAGATGAGAAGGCTGCATTAGATGCAAATTGTAAAAAGGTAAGCAGCCGCTTAAGTGACAATGCGAAGAAGCGAATGGACCTTAGGGAGAAAGATAGCCAATTGGATGTGGAATTACAAGGAAAGTACAAAGATATGGAAGAGTTGAGGGGGCAGGAAAAATCTCGACAACAAAAACTTGAAAAAGCCAGGAAGGAGCTTGCTGCTGCGGAATTAGAACTTGAGAATCTACACCCTTTTGTACCTCCAAAGGATGAGCTACAAAGACTGAAAGATGAAATTCGGAGGTTGGATACTTCTGCTAGTCAAGTGAGACAGAATAGGTCACAAGCAGAAAGTGAAATAAAACATAAAAAGTCACTCTTGATGAGGTGTAAAGAGAGATTGAGGGATATGAATAATAAAAGTACCAAGTGTTTGCTTGCATTGCAAAAATCTGGGGTTGACAAAATTTTTGAAGCTTATAAATGGGTCCAAGAAAATCGTAATCAATTCAACAAGGAAGTCTTTGGTCCAGTTTTACTTGAGGTGAATGTCCCAAACCGGGAACATGCCCGGTATCTGGAGGGTCATGTTGCTTACTACGTCTGGAAGTCTTTCATGACACAAGATTCTCGTGATCGGGACCTTTTAGCGAAAAACCTAAAGTTCTTTGATGTTCCAATTCTAAATTATACTGGTGGTGATGGCCACCCAATAAGGCCTTTTGAAATTTCTGAAGATATGCGTGCTCTTGGCATCAATTCCCGATTGGACCAAATTTTTGATGCTCCAGTTGCAGTCAAGGAGATGCTGATTAAAAACTCAAGTCTAGATAATTCATATATTGGAACCAAAGAAACTGATCAGAAATCTGAGGTGGTTCCAAGATTGGGAATTATGGATTTATGGACACCGGAAAATCACTACCGTTGGTCTGGGTCAAGATATGGAAATCATGTGTCCGCAAGTGTTGAACAAGTGAACCCCCCGGATCTTCTATCCAATACTTCGAATGTGGGAGAAATTGAGATTTTGCTTTCCGAAGAAAGGGAGCTTGAAAGACAAATTGCTCCCTTGGAGGAAAGCATCAAAAGATCTCAAGATGAGGAAAGAAGCTTACAGAATCAAGCTGCTGATCTCCGTAAACAGTGGGAAACCGTTAGTACTACGGCACAGAATGAGCAAAGAAAACGTAAAGAAATCGTTCACCGGATTGAACAAAGGAAAGGGATACTGAAATCGATGGAGGAGAAGGTTGATATGGATACTGAGATAGCAAAGCTTGTTGAGCAGGCTACAAAATGTAACATTCAGCGATTTCACAATTCAATTAAAATTAAGGATCTTCTTGTTGAAGCTATGGGTTACAGGCAGAATGTTGTTGAACTACGTATGTCGTTAATTGAATTTGAAGCAAAGATTGGAGAAATGGAGGCCAATCTGAAGCAGCATGACAAGTTTGCTCTGCAAGCATCATTGCACTTTGATAACTGTAAGAAAGAGGCTGAGAATTGTAAGCAGCAGCTTACAGATTCCTTGAACTATGCTAAATCAATTGCTCGGCTTACACCTGAGCTAGAGAAGGAATTTCTTGAGATGCCCACTACAATAGAGGAATTGGAAGCAGCTATCCAAGATACCACTTCTCAAGCCAATTCAATCCTTTTTGTCAATCATAACATATTGGAACAATACGAGCATCGTCAAAGACAAATAGAAGATCTTGCAGCAAAACTTGAAGCAGACAAAAATGAATGTAGAAGGTGTTTAGCTGAATTAGATAACATTAAGGGGAAATGGCTTCCAACACTGAGAAACCTTGTAGCCCAGATAAATGAAACCTTTAGATGTAATTTTCAAGAGATGGCTGTTGCCGGAGAAGTCTCACTAGATGAGCATGATACGAACTTCGATCAATTTGGAATACATATAAAAGTCAAATTCAGAGAAAATGGACAGCTTCAAATTCTCAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACTAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAACTAGTGAGAGCAGCAAGCAAGCCAAATACACCACAATGTTTCTTGCTTACCCCTAAATTGCTACCAGATCTTCAATATAGTGAGGCATGCAGCATATTGAATGTAATGAATGGCCCTTGGATCGAGCAACCATCGAAGGTGTGGACCACTGGTGATCCCTGGAGTATTATAACGGGACATGTCAGACAGACCCTATGTTAA 3159 0.4084 MAESRPPKRSKITRGEDDYMPGNILEIELHNFMTFDYLKCKPAPRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHKEERLIIMRKINTNNKSEWLFNGNVVPKKDVAESIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHIELSLEKNEGTLKQLKERNAELEKDVERVRQRDELLAKAESMKKKLPWLRYDMKQAEYREAKKRENDAEKALKEAAKLLSDLKEPIKKQKDEKAALDANCKKVSSRLSDNAKKRMDLREKDSQLDVELQGKYKDMEELRGQEKSRQQKLEKARKELAAAELELENLHPFVPPKDELQRLKDEIRRLDTSASQVRQNRSQAESEIKHKKSLLMRCKERLRDMNNKSTKCLLALQKSGVDKIFEAYKWVQENRNQFNKEVFGPVLLEVNVPNREHARYLEGHVAYYVWKSFMTQDSRDRDLLAKNLKFFDVPILNYTGGDGHPIRPFEISEDMRALGINSRLDQIFDAPVAVKEMLIKNSSLDNSYIGTKETDQKSEVVPRLGIMDLWTPENHYRWSGSRYGNHVSASVEQVNPPDLLSNTSNVGEIEILLSEERELERQIAPLEESIKRSQDEERSLQNQAADLRKQWETVSTTAQNEQRKRKEIVHRIEQRKGILKSMEEKVDMDTEIAKLVEQATKCNIQRFHNSIKIKDLLVEAMGYRQNVVELRMSLIEFEAKIGEMEANLKQHDKFALQASLHFDNCKKEAENCKQQLTDSLNYAKSIARLTPELEKEFLEMPTTIEELEAAIQDTTSQANSILFVNHNILEQYEHRQRQIEDLAAKLEADKNECRRCLAELDNIKGKWLPTLRNLVAQINETFRCNFQEMAVAGEVSLDEHDTNFDQFGIHIKVKFRENGQLQILSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDPWSIITGHVRQTLC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4115 1052 Gene3D - 846 1022 IPR027417 -
Lja3g4115 1052 CDD ABC_SMC5_euk 925 1027 - -
Lja3g4115 1052 Coils Coil 247 277 - -
Lja3g4115 1052 Coils Coil 282 302 - -
Lja3g4115 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 18 1048 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lja3g4115 1052 Coils Coil 372 399 - -
Lja3g4115 1052 Coils Coil 194 235 - -
Lja3g4115 1052 Coils Coil 331 362 - -
Lja3g4115 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 762 1003 IPR027417 -
Lja3g4115 1052 Coils Coil 621 662 - -
Lja3g4115 1052 CDD ABC_SMC5_euk 22 179 - -
Lja3g4115 1052 Pfam RecF/RecN/SMC N terminal domain 24 993 IPR003395 -
Lja3g4115 1052 Gene3D - 23 230 IPR027417 -
Lja3g4115 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 285 IPR027417 -
Lja3g4115 1052 Coils Coil 841 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4115 Lja-Chr3 80614487 80644773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4115 1 1041 Structural Maintenance of Chromosomes family AT5G15920 62.248 0.0 1309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4115 K22803 - gmx:100778678 1650.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4115 3 80614487 80644773 Lja3g4115 3 80614487 80644773 ECH