Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4111 ATGGATCGATACTATTGCGATGTGTGTCCAAACATCAGAGATAGTGACTATGGCAGAGAACTGTCACTGTGCCCAGTTGAACAACTGTTCACTGTTGAGTTTGAGATCAAGAACAAACACGATGCCCCTCCCTCTGAGACTTTGCATTACACTTTTCATAACATCTCCAAGAACAATATGGATCAACAAAACGTTGAATCTATGCTTTCTCGTGTGGGGTTCCCCAATGAAGCTTTCCAGTTTGTGGTCCCAAAAGTCTTGGAATGTGCTGATGAAATTGCCAACAGGACGTACAAGGATCGAAAGCTTTTGTCCATAGTTGTGTATATTCTTGTCAGCCAAGCCAGTGATGAAGATGAGATTAATGTTGATTATGATAGTGGTTTTGAAGAATATTCAGAGGAGGGTGATCAAGATTTTGGGTTGGTGCCTTCTGCAGCAGCTGTGACTTCAATTGATGAGGGTTTGGAGATGATGAGGGATGCTGATGATGATGATTATGATGGTGGTTTTGAAGAATATTTTGAGGAGGCTGGTGATGAAGATTTTGGGTTGGTGCCTGCATCTGTGAAATCAATTGAGGAGTTGGAGATGGTGAGGGTTGAGAAAGAAGAGAATTGTGCAATCTGTTTCGAGGATTTTCATGATGTTGGTGTTCGGATGCCTTGTTTACACATGTTTCATAAGGATTGCATCACTAGTTGGTTGCAAGCGGCCAATTCTTGCCCTTTGTGTCGGTTTCAGATGAACAAAATTAGTGAAGAATGA 768 0.418 MDRYYCDVCPNIRDSDYGRELSLCPVEQLFTVEFEIKNKHDAPPSETLHYTFHNISKNNMDQQNVESMLSRVGFPNEAFQFVVPKVLECADEIANRTYKDRKLLSIVVYILVSQASDEDEINVDYDSGFEEYSEEGDQDFGLVPSAAAVTSIDEGLEMMRDADDDDYDGGFEEYFEEAGDEDFGLVPASVKSIEELEMVRVEKEENCAICFEDFHDVGVRMPCLHMFHKDCITSWLQAANSCPLCRFQMNKISEE* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4111 255 SMART ring_2 207 245 IPR001841 -
Lja3g4111 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 252 IPR013083 -
Lja3g4111 255 PANTHER F6A14.12 PROTEIN-RELATED 105 249 - -
Lja3g4111 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 105 249 - -
Lja3g4111 255 SUPERFAMILY RING/U-box 200 251 - -
Lja3g4111 255 ProSiteProfiles Zinc finger RING-type profile. 207 246 IPR001841 -
Lja3g4111 255 Pfam Ring finger domain 206 246 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4111 Lja-Chr3 80585201 80585968 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4111 170 249 C3H Transcription Factor Family AT5G01980 40.000 2.18e-14 70.5