Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4099 ATGGATCAACAAAACGTTGAATCTATGCTTTCTCGTGTGGGGTTCCCCAATGAAGCTTTCCAGTTTGTGGTCCCAAAAGTCTTGGAATGTGCTGATGAAATTGCCAACAGGACGTACAAGGATCGAAAGCTTTTGTCCATAGTTGTGTATATTCTTGTCAGCCAAGCCAGTGATGAAGATGAGATTAATGTTGATTATGATAGTGGTTTTGAAGAATATTCAGAGGAGGGTGATCAAGATTTTGGGTTGGTGCCTTCTGCAGCAGCTGTGACTTCAATTGATGAGGGTTTGGAGATGATGAGGGATGCTGATGATGATGATTATGATGGTGGTTTTGAAGAATATTTTGAGGAGGCTGGTGATGAAGATTTTGGGTTGGTGCCTGCATCTGTGAAATCAATTGAGGAGTTGGAGATGGTGAGGGTTGAGAAAGAAGAGAATTGTGCAATCTGTTTCGAGGATTTTCATGATGTTGGTGTTCGGATGCCTTGTTTACACATGTTTCATGAGAGTTGCATCAAAACTTGGTTGCATGCGGCCAATTCTTGCCCTTTGTGTCGGTTTCAGATGAACAAAATTAGTGAAGAATGA 591 0.4162 MDQQNVESMLSRVGFPNEAFQFVVPKVLECADEIANRTYKDRKLLSIVVYILVSQASDEDEINVDYDSGFEEYSEEGDQDFGLVPSAAAVTSIDEGLEMMRDADDDDYDGGFEEYFEEAGDEDFGLVPASVKSIEELEMVRVEKEENCAICFEDFHDVGVRMPCLHMFHESCIKTWLHAANSCPLCRFQMNKISEE* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4099 196 PANTHER F6A14.12 PROTEIN-RELATED 48 190 - -
Lja3g4099 196 SMART ring_2 148 186 IPR001841 -
Lja3g4099 196 SUPERFAMILY RING/U-box 141 192 - -
Lja3g4099 196 ProSiteProfiles Zinc finger RING-type profile. 148 187 IPR001841 -
Lja3g4099 196 Pfam Ring finger domain 147 187 IPR001841 -
Lja3g4099 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Lja3g4099 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 48 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4099 Lja-Chr3 80434677 80435267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4099 111 190 C3H Transcription Factor Family AT5G01980 40.000 9.54e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4099 - - lja:Lj3g3v0826180.1 347.821