Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4092 ATGTTATATTTGCTTCAAAACCAAAAAAAATTAGTCAAGAACGAAACTGCATATTCAAAATTAAACCCGCTAATAACTGCAACCTCCTCCTTCATTTCGTTCAGTAGTTGCAGCAGCAGCAGCACCATGGAGGCCGCAGTCATCGACGCCGGTTCCAGCCTCCTCAAAGCCGGTTTCGCAATTCCCGATCAAACTCCCGCAATGATAATTCCTACCCAGATGAAACGAATGGTTGATGATGGTTCAGTGAGTGATAATTCGTTGGCGGATGAGATTGCCGTTGATCCGATCGTGCGAGGGTACATTCGAGATTGGGATGCTGTTGAGGATTTGTTGCAATATGTTTTGTACACTGGCCTTGGGTGGGAATTGGGCAATGAAGGACAGATACTATTTACTGATCCACTTTGTACCCCAAAGGCTAATAAAGAACAGTTAGTGCAACTATTGTTTGAAACATTCAACGTATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTGTCACTATATGCTGTGGGACGTATCTCAGGCTGCACAGTTGATATTGGTTATGGAAAAATAGATATTGCTCCGGTAATTGAGGGTGCTGTCAACCACATTGCCTCGAGAAGATTTGAGTTTGGAGGTACTGATCTCACTAATTTTCTGGCACAAGAACTTGGCAAATCCAATCCGCTAGTGAATATCAGCATGTCTGATGTTGAGAAAATAAAACAGCAATACTCATGTTGCGCTGAAGATGATTTAGCTTATCAGAAGACCCAAGATTCTTGCCCTGCGGAGACACATACCCTTCCTGATGGACAGTGGGAAGGAGACAAAAATAAAAGGGATGGTGGGTTGAAATTGAAAGTCAATAAGGACTAA 867 0.4291 MLYLLQNQKKLVKNETAYSKLNPLITATSSFISFSSCSSSSTMEAAVIDAGSSLLKAGFAIPDQTPAMIIPTQMKRMVDDGSVSDNSLADEIAVDPIVRGYIRDWDAVEDLLQYVLYTGLGWELGNEGQILFTDPLCTPKANKEQLVQLLFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGYGKIDIAPVIEGAVNHIASRRFEFGGTDLTNFLAQELGKSNPLVNISMSDVEKIKQQYSCCAEDDLAYQKTQDSCPAETHTLPDGQWEGDKNKRDGGLKLKVNKD* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4092 288 Gene3D Actin; Chain A, domain 4 215 257 - -
Lja3g4092 288 PANTHER BNACNNG31150D PROTEIN 43 269 - -
Lja3g4092 288 MobiDBLite consensus disorder prediction 257 288 - -
Lja3g4092 288 CDD NBD_sugar-kinase_HSP70_actin 46 208 - -
Lja3g4092 288 SUPERFAMILY Actin-like ATPase domain 173 270 IPR043129 -
Lja3g4092 288 MobiDBLite consensus disorder prediction 267 288 - -
Lja3g4092 288 SUPERFAMILY Actin-like ATPase domain 43 180 IPR043129 -
Lja3g4092 288 Gene3D - 165 214 - -
Lja3g4092 288 Gene3D - 47 164 - -
Lja3g4092 288 PANTHER ACTIN 43 269 IPR004000 -
Lja3g4092 288 Pfam Actin 43 269 IPR004000 -
Lja3g4092 288 PRINTS Actin signature 142 155 IPR004000 -
Lja3g4092 288 PRINTS Actin signature 259 275 IPR004000 -
Lja3g4092 288 PRINTS Actin signature 87 109 IPR004000 -
Lja3g4092 288 PRINTS Actin signature 167 186 IPR004000 -
Lja3g4092 288 SMART actin_3 43 287 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4092 Lja-Chr3 80341381 80344818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4092 43 269 Cytoskeleton Gene Families AT3G18780 31.837 2.86e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4092 K16615 - gmx:100794153 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4092 3 80341381 80344818 Lja3g4092 3 80341381 80344818 ECH