Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4085 ATGTACGGTGATTCAGAGATTTCAAAATCTGCTTCAACTTCATCTGCGGTAGAAGGTTCAACTTACGTCAAAGACATGAAAAATCTAACTGTTCATACTGAAGATTCTTTTTCCACCTTACATGAACTTGCTTCTAACAATGATTTTGAAAGTTTCAAGCTAGCTTTAGACAGGGATGCTTCTCTAATAAATGAAGTTGGCCCCTGGTATGTCCGTCAAAGTGGATCCAAACAAATTGTTCTTGAGCATAGAACTCCTTTAATGGTTGCTTCTTGCTATGGGAGTATTGATGTTTTAAAGCTTATACTCACATGTTCAGAGGCTGATGTAAATTTCTCCTGTGGGAATGATAAAAGCACTGCCCTTCACTGTGCCGCTTCAGGCGGTTCTGTTAATGCAGTTGATGTTATGAAGCTGCTTTTATCTGCTGGTGCTGATATCAATTGTGTGGATGCTAATGGAAACCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGTTCCAAGGTATGAAAACAATTATTGAAGAACTTCTCTCAGATAGTGCTTCTGATGGGTCTGTTGATACCTGCTTTCTTCCAGCATATGTTAATTCATCAAGTCCTAGTTTAGCTGCCCATTTATCATCCCTTGAAAATGGGTTGCCATCCTCTCCTGTAGCTTTGAAGTTCAATGATGCAACTATCAATTCTACATCTGAGAAAAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCCACAGACGAGTTTCGCATGTTTTCATTCAAGGTTCGCCCTTGCTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCCCGTAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTGCCATGTCCTGAATTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCCCATGGAGTATTTGAGTGCTGGCTACACCCTGCTCAGTATCGGACAAGACTCTGCAAAGATGGCACTGATTGCAACAGAAGGGTATGTTTTTTTGCTCACACTACTGAAGAGCTGCGTCCATTGTATGTGTCCACTGGGTCTGCTGTACCTTCACCCCGATCTTCTGCCTCTGCTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTTCTTCCATGTTCACCGTCAGCGATTTCTTATGTGGCTCCATCCCCCTTTGCACAGCCAATATCTCCATCTGCCAATGGCATGTCTCACTCATCTACTGCTTGGCCGCAGCCAAATGTGCCTGCGCTTCATTTACCAGGAAGCAATATTCAAACTAGCCGTTTGAGATCTTCTCTTAGTGCTCGCGACATGCCACCTGAAGACTTGAATTCGGTACCAGACTTCGATGGCCAGCGTCACCTGTTGAATGACTTGGGCTGTTTCTCCCAACCGTGTACTGGTTCCATTTCAATGAGCCGATCTGGTTGGTCTAAGACACTAACTCCATCAAATCTCGATGATCTATTTTCAGCTGAAATTTCTTCGTCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGTATTTTCCCCAACACATAGATCAGCTGTTCTCAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATAAATACAAATGTCTTATCTCCTAATAACGGTGAGCATCCTCTAAGAGATTCTTCATTTGGTGTCTCTTCGCCTGGAAGGATGTCACCAAGAAGTGTGGAACCCCTCTCTCCAGGGAGCTCTCGATTATCAGCATTTGCTCAGCGTGAGAAACAACAGCAACAGCTGCGGAGCCTTAGTTCAAGGGATCTGGGCGCCAACAATCCTGCCTCAATTGTTGGGTCCCCTATTAACTCCTGGTCTAAGTGGGGATCTCCTACTGGAAAAGTAGATTGGTCTGTAAATGGAAATGAGCTAGGTCGATTACAAAGATCATCCTCATTTGAGCTTGGAAACAATGGAGAAGAGCCTGATCTATCATGGGTCCAATCCCTTGTCAAGGACACCCCACCTGAAATAAAAGAGAAGTTGGCAGTGTCTGGCCCTATTGCATCTGCTGATGGACTGAATTCCAATTTTCAAATGGAGACTGTTGATAATTCTGTTTTAGAAGCCTGGCTCGAGCAAATGCACCTGGATCAGCATGTAGTTTATAGTCAAAATTGA 2175 0.4382 MYGDSEISKSASTSSAVEGSTYVKDMKNLTVHTEDSFSTLHELASNNDFESFKLALDRDASLINEVGPWYVRQSGSKQIVLEHRTPLMVASCYGSIDVLKLILTCSEADVNFSCGNDKSTALHCAASGGSVNAVDVMKLLLSAGADINCVDANGNRPVDVIVVPPKFQGMKTIIEELLSDSASDGSVDTCFLPAYVNSSSPSLAAHLSSLENGLPSSPVALKFNDATINSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTDCNRRVCFFAHTTEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPCSPSAISYVAPSPFAQPISPSANGMSHSSTAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPPEDLNSVPDFDGQRHLLNDLGCFSQPCTGSISMSRSGWSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHRSAVLNQFQQLQSSLSPINTNVLSPNNGEHPLRDSSFGVSSPGRMSPRSVEPLSPGSSRLSAFAQREKQQQQLRSLSSRDLGANNPASIVGSPINSWSKWGSPTGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKDTPPEIKEKLAVSGPIASADGLNSNFQMETVDNSVLEAWLEQMHLDQHVVYSQN* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4085 724 Pfam CCCH-type zinc finger 300 320 IPR041367 -
Lja3g4085 724 PANTHER UNKEMPT FAMILY MEMBER 20 718 IPR045234 -
Lja3g4085 724 SMART ANK_2a 35 65 IPR002110 GO:0005515
Lja3g4085 724 SMART ANK_2a 117 149 IPR002110 GO:0005515
Lja3g4085 724 SMART ANK_2a 82 112 IPR002110 GO:0005515
Lja3g4085 724 Pfam Ankyrin repeats (3 copies) 40 151 IPR002110 GO:0005515
Lja3g4085 724 ProSiteProfiles Zinc finger C3H1-type profile. 300 322 IPR000571 GO:0046872
Lja3g4085 724 ProSiteProfiles Ankyrin repeat profile. 117 152 IPR002110 GO:0005515
Lja3g4085 724 ProSiteProfiles Ankyrin repeat region circular profile. 117 151 - -
Lja3g4085 724 MobiDBLite consensus disorder prediction 577 613 - -
Lja3g4085 724 Gene3D - 296 358 - -
Lja3g4085 724 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 20 718 - -
Lja3g4085 724 SMART c3hfinal6 295 321 IPR000571 GO:0046872
Lja3g4085 724 SMART c3hfinal6 330 353 IPR000571 GO:0046872
Lja3g4085 724 SUPERFAMILY Ankyrin repeat 29 180 IPR036770 -
Lja3g4085 724 MobiDBLite consensus disorder prediction 543 613 - -
Lja3g4085 724 Gene3D - 22 208 IPR036770 -
Lja3g4085 724 MobiDBLite consensus disorder prediction 543 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4085 Lja-Chr3 80276599 80280827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4085 6 717 C2H2 Transcription Factor Family AT5G12850 53.605 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g4085 Ank_2 2.4e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4085 - - gmx:100792574 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4085 3 80276599 80280827 Lja3g4085 3 80276599 80280827 ECH