Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4082 ATGAGGAAACCTGATCTGGTCATGGCAAAAGACAGAGTTATGAACAACAACAACAACAGTAGCAATAACAACAATGTTGTTAAGAGCAAGCTTAGGAAGGGGTTATGGTCACCTGAGGAAGATGAAAAGCTTCTGAGGTACATGATAACTAAGGGACAAGGGTGCTGGAGTGACATTGCTAGGAATGCTGGTCTTCAGAGATGTGGTAAAAGCTGTCGTCTCCGTTGGATTAATTACTTGAGACCTGATCTCAAGCGCGGCGCATTTTCGCCACAGGAGGAAGATCTCATCGTTCATTTACACTCCATTCTTGGAAACAGATGGTCTCAGATTGCTGCACGTCTCCCTGGTCGCACAGACAATGAGATCAAGAATTTCTGGAACTCCACTCTGAAGAAGAGATTCAAGATCAACAACAACTTGTCCACCCCATCACCAAACAACAGTGACTCATCTGAACCCAGAGATCATGTTTCTGGGGGCAACAACAACATTATCATGCCTAATATGAATGAGCAACATGACCTCATGACAATGTGCATGGATTCATCCTCATCCACATCATCATCATCCATGCAATCCATGCGCAATATGCCACCTTCCATGGTTCTACCTGATCATCAACACTTTGATCCCTTTTTCGCCATGACCAGTGCACCCACCGGTTTCCCTGACTTAATGTCTGCTGCATGCTTCACACAATTTGGCATGGTTGGTGATGATGATGGTGATGGACTTCATTGTGATTATGGTAAAATGGGGTTAGAGAGTGACTTTTCCCTTCCTCCACTAGAGATTAGTCGAAGCAATAATAATATTGAAGTCCCAATTAATAATAATAGTAATGTGAAAAGTCATAACAACAACAACCACTTCAATAATAGTTGCTTCAATAACACTGATGATCAGATTCAAAACTCCAACATAGTAGTAGAGGACTTGTTTGGGTTTGGAAATCATAATGGGCAAGCAGGGGAAAACTTAAGAATGGGGGAATGGGACTTGGAGGGTTTGATGCAAGACATGTCCTTTTTTCCTTCCCTTGATTTCCAAGTTTAA 1059 0.423 MRKPDLVMAKDRVMNNNNNSSNNNNVVKSKLRKGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRFKINNNLSTPSPNNSDSSEPRDHVSGGNNNIIMPNMNEQHDLMTMCMDSSSSTSSSSMQSMRNMPPSMVLPDHQHFDPFFAMTSAPTGFPDLMSAACFTQFGMVGDDDGDGLHCDYGKMGLESDFSLPPLEISRSNNNIEVPINNNSNVKSHNNNNHFNNSCFNNTDDQIQNSNIVVEDLFGFGNHNGQAGENLRMGEWDLEGLMQDMSFFPSLDFQV* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4082 352 MobiDBLite consensus disorder prediction 138 165 - -
Lja3g4082 352 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Lja3g4082 352 PANTHER MYB DOMAIN PROTEIN 55 18 352 - -
Lja3g4082 352 SMART sant 32 82 IPR001005 -
Lja3g4082 352 SMART sant 85 133 IPR001005 -
Lja3g4082 352 CDD SANT 88 131 IPR001005 -
Lja3g4082 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Lja3g4082 352 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Lja3g4082 352 CDD SANT 36 80 IPR001005 -
Lja3g4082 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 80 IPR017930 -
Lja3g4082 352 PANTHER TRANSCRIPTION FACTOR MYB83 18 352 - -
Lja3g4082 352 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Lja3g4082 352 Pfam Myb-like DNA-binding domain 86 130 IPR001005 -
Lja3g4082 352 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Lja3g4082 352 Gene3D - 87 158 - -
Lja3g4082 352 Gene3D - 30 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4082 Lja-Chr3 80215369 80217643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4082 1 352 MYB Transcription Factor Family AT3G08500 47.671 8.69e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g4082 Myb_DNA-binding 5.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4082 K09422 - gmx:100796379 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4082 3 80215369 80217643 Lja3g4082 3 80215369 80217643 ECH