Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4079 ATGGTTGATCAGGTTCAGCACCCTACAATCGTGGAGAAGGCTACTGGGAAGCTCCACTCTCAGTTTGGTCTGTCATCTGGTATCAAGAGTTATGATGGTGCTTACCGTCATCCTGCCCTCTACCAAAGGCGCTCATTCGGGAACTACTCAAATGCTGGATTGCAGTACCCGGTGATGCCCTCTTGCAGAGCCTCTGTTGATTTATCTGCAGCTGCTGCAACTGCCTCCCCTGTCTTTGTCGGAGCTCCAGCTGAGAAAAGCCATTTCTTTATTGACTTTCTCATGGGTGGTGTTTCTGCTGCTGTCTCCAAAACTGCTGCTGCTCCCATCGAGAGGGTTAAGCTTTTGATCCAGAACCAGGATGAGATGATTAAGACTGGCAGGCTATCCGAGCCCTACAAGGGTATTGGTGATTGTTTTGCTAGAACCACAAAGGATGAGGGTATCGTTGCCCTATGGAGAGGTAACACTGCAAATGTCATCCGTTATTTCCCCACTCAGGCTCTGAACTTTGCATTCAAGGACTACTTCAAGAGGCTTTTCAACTTCAAGAAGGACAGGGATGGTTACTGGAAATGGTTTGCTGGCAACTTGGCTTCTGGAGGTGCTGCCGGTGCCTCATCCCTCTTGTTTGTTTACTCTCTTGACTATGCCCGTACCCGTCTTGCTAACGATGCAAAGGCTGCAAAGAAAGGTGGAGAAAGGCAATTCAATGGTCTTGTTGATGTCTACAGGAAGACATTGGCATCTGATGGTGTTGCTGGGCTTTACCGTGGGTTCAACATCTCCTGTGTTGGAATCATTGTGTATCGTGGTCTCTACTTTGGAATGTATGATTCCCTGAAACCAGTACTCCTTACTGGAAAATTGCAGGATAGTTTCTTTGCAAGCTTTGGGCTTGGATGGCTCATCACCAATGGTGCAGGTCTTGCATCATACCCCATTGACACCGTTAGGAGAAGAATGATGATGACATCTGGTGAAGCTGTCAAGTACAAGAGCTCCTTGGATGCATTCCAACAAATCCTCAAGAATGAGGGAGCCAAGTCGCTGTTTAAGGGAGCTGGTGCTAACATCCTCCGTGCTGTTGCTGGTGCTGGTGTGCTTGCTGGTTACGACAAGTTGCAGGTCATTGTGTTCGGCAAGAAATATGGATCTGGTGGCGCTTAA 1170 0.4812 MVDQVQHPTIVEKATGKLHSQFGLSSGIKSYDGAYRHPALYQRRSFGNYSNAGLQYPVMPSCRASVDLSAAAATASPVFVGAPAEKSHFFIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKTGRLSEPYKGIGDCFARTTKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLASDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKLQDSFFASFGLGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFQQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4079 389 Gene3D Mitochondrial carrier domain 90 385 IPR023395 -
Lja3g4079 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 292 378 IPR018108 -
Lja3g4079 389 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 2 389 - -
Lja3g4079 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 284 IPR018108 -
Lja3g4079 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 87 180 IPR018108 -
Lja3g4079 389 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 2 389 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g4079 389 SUPERFAMILY Mitochondrial carrier 87 374 IPR023395 -
Lja3g4079 389 Pfam Mitochondrial carrier protein 293 378 IPR018108 -
Lja3g4079 389 Pfam Mitochondrial carrier protein 87 184 IPR018108 -
Lja3g4079 389 Pfam Mitochondrial carrier protein 191 287 IPR018108 -
Lja3g4079 389 PRINTS Adenine nucleotide translocator signature 133 154 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g4079 389 PRINTS Adenine nucleotide translocator signature 192 205 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g4079 389 PRINTS Adenine nucleotide translocator signature 166 178 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g4079 389 PRINTS Adenine nucleotide translocator signature 297 313 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g4079 389 PRINTS Adenine nucleotide translocator signature 89 101 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lja3g4079 389 PRINTS Mitochondrial carrier protein signature 257 275 IPR002067 GO:0055085
Lja3g4079 389 PRINTS Mitochondrial carrier protein signature 301 323 IPR002067 GO:0055085
Lja3g4079 389 PRINTS Mitochondrial carrier protein signature 92 105 IPR002067 GO:0055085
Lja3g4079 389 PRINTS Mitochondrial carrier protein signature 105 119 IPR002067 GO:0055085
Lja3g4079 389 PRINTS Mitochondrial carrier protein signature 207 225 IPR002067 GO:0055085
Lja3g4079 389 PRINTS Mitochondrial carrier protein signature 155 175 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4079 Lja-Chr3 80181226 80184204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4079 1 389 Antiporters AT5G13490 80.153 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4079 K05863 - gmx:100789942 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4079 3 80181226 80184204 Lja3g2723 3 40091101 40094871 ECH
Lja3g4079 3 80181226 80184204 Lja3g4079 3 80181226 80184204 ECH