Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g4078 | ATGTCTAAGAGGGTTCTCTGTAAGTTCTTTGCTCATGGAGCATGTCTGAAAGGGGAGCATTGTGAATTTTCGCATGACTGGAAAGATCCTCCAAACAATATATGCACATATTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGATGCAGATATGATCATGTCAAAGCTTCTCAAGCACAGTCCTCTGCTCCAAGTTCTTCAGTAGTCGAACACCAGCCCCTTGTTTCTGGTTCTTTTGTGTTTGGTAATCCAAGAATTTCATCAAATGGTGTTGCTGCAGCTGCGGAGTCTTCTCTTTCTAAGAGTCCTTACATTCACACCAGTAAACCAGCCTGGAACCAAGAATCTAATTATCATGATTTATTAGGGGAAGATGATGTTGATGTTGGCCAACCTATAACTACTTTACCTTCTGAGCTTTCAATATGCTCATTTGCTGCTGTTGGCAACTGTCCAAGAGGGGAAAAGTGTCCTCATATTCATGGGGATCTATGTCCCACTTGTGGGAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATCAAGAGTTGTGAAGATAAGCAAAAGCATCTTGAGGCATTGAAACGGAGTCAAGAAATTGAATGCAGTGTATGCCTGGAGCGTGTTCTTTCAAAGCCTACAGCAGCTGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTCTGCATATCCTGTATTAGGAATTGGCGTAATAGTAACCCAACATTGGGGATGGACGTTAATGGCACATTGAGGGCTTGTCCTATCTGTCGCAAGCTATCTTACTTTGTTGTTCCAAGTGTTATTTGGTACTCTACAAGTGAAGAGAAACAGGAAATTGTTGATACCTACAAGGCAAAGCTCAAGTCAATTGACTGCAAGCATTTTGACTTTGGGGATGGGAATTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTTGAGCAGGTAGTTTTGAGACATCTTGGAGCAGCAGATGGCGATACTGTAATTGCCAAAGAGATCAGGTTGTCGGATTTCCTTGCTAACATGCATTTAAGATAA | 1080 | 0.4231 | MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGVCAYGSRCRYDHVKASQAQSSAPSSSVVEHQPLVSGSFVFGNPRISSNGVAAAAESSLSKSPYIHTSKPAWNQESNYHDLLGEDDVDVGQPITTLPSELSICSFAAVGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHIKSCEDKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRNSNPTLGMDVNGTLRACPICRKLSYFVVPSVIWYSTSEEKQEIVDTYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGDTVIAKEIRLSDFLANMHLR* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g4078 | 359 | Pfam | Zinc finger, C3HC4 type (RING finger) | 206 | 263 | IPR018957 | GO:0046872 | |
| Lja3g4078 | 359 | SMART | ring_2 | 206 | 263 | IPR001841 | - | |
| Lja3g4078 | 359 | ProSiteProfiles | Zinc finger C3H1-type profile. | 137 | 164 | IPR000571 | GO:0046872 | |
| Lja3g4078 | 359 | SUPERFAMILY | RING/U-box | 195 | 270 | - | - | |
| Lja3g4078 | 359 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE | 1 | 359 | - | - | |
| Lja3g4078 | 359 | ProSitePatterns | Zinc finger RING-type signature. | 230 | 239 | IPR017907 | - | |
| Lja3g4078 | 359 | ProSiteProfiles | Zinc finger C3H1-type profile. | 293 | 322 | IPR000571 | GO:0046872 | |
| Lja3g4078 | 359 | CDD | RING-HC_MKRN | 206 | 264 | - | - | |
| Lja3g4078 | 359 | Gene3D | - | 33 | 164 | - | - | |
| Lja3g4078 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 206 | 264 | IPR001841 | - | |
| Lja3g4078 | 359 | PANTHER | MAKORIN-RELATED | 1 | 359 | IPR045072 | - | |
| Lja3g4078 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 182 | 301 | IPR013083 | - | |
| Lja3g4078 | 359 | Pfam | CCCH-type zinc finger | 34 | 53 | IPR041367 | - | |
| Lja3g4078 | 359 | Pfam | CCCH-type zinc finger | 6 | 26 | IPR041367 | - | |
| Lja3g4078 | 359 | SUPERFAMILY | CCCH zinc finger | 3 | 26 | IPR036855 | GO:0046872 | |
| Lja3g4078 | 359 | SUPERFAMILY | CCCH zinc finger | 32 | 53 | IPR036855 | GO:0046872 | |
| Lja3g4078 | 359 | ProSiteProfiles | Zinc finger C3H1-type profile. | 29 | 56 | IPR000571 | GO:0046872 | |
| Lja3g4078 | 359 | Gene3D | - | 1 | 32 | - | - | |
| Lja3g4078 | 359 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 28 | IPR000571 | GO:0046872 | |
| Lja3g4078 | 359 | SMART | c3hfinal6 | 1 | 27 | IPR000571 | GO:0046872 | |
| Lja3g4078 | 359 | SMART | c3hfinal6 | 138 | 163 | IPR000571 | GO:0046872 | |
| Lja3g4078 | 359 | SMART | c3hfinal6 | 293 | 321 | IPR000571 | GO:0046872 | |
| Lja3g4078 | 359 | SMART | c3hfinal6 | 30 | 55 | IPR000571 | GO:0046872 | |
| Lja3g4078 | 359 | Pfam | RNA-binding, Nab2-type zinc finger | 142 | 161 | - | - | |
| Lja3g4078 | 359 | Pfam | RNA-binding, Nab2-type zinc finger | 298 | 320 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g4078 | Lja-Chr3 | 80167850 | 80174661 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Lja3g4078 | zf-C3HC4 | 2.3e-07 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g4078 | K15687 | - | gmx:100787817 | 648.277 |