Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4077 ATGTTCAACAGGGGAATCTGCAAGTTCTATGCCCGTGGAAGGTGTTTGAAAGGGGAGCAATGTGATTATTCTCATCAGAGAAACGATACTCCAGTTGATATTTGCGCTTATTATCAAAAAGGATCTTGCACCTATGGTAGTCAATGCAGATTTAAGCATGTCAAAGCATCTCAAGCATCGTCTTCAGCAGATAGGCGCCAATCTCTTGTTTCAGATTCTGCTGCAGCTCATACTACGAGAGGAACATCAAGCTCGGTTCGGAAGGCAGCAAATTTGTCTTCATATGACAAGCGTGCACAGAGTTTACAACATAAGCATCAGGAATCTCTGGGTCATGGTGATGTTGGTGAATCCAGTACTCGTACTGCTACTGCTACGCCATCTGTACATATCTTTTGTCCATTTGCTGCTGCAGACTGCCCCTCAAGAGATAAGTGTCCTCTCATTCATGGAAATCAATGTTCATACTGTGAAAAATATTGCTTGCATCCTACTGATCGAGAGGGGAAAAAAAATCATTTGAGGACTTGTGAGAAAAAGGAAAAATACCTTCAGGATTTGAGCAAAGAAGTAGAATGCAATGTTTGTCTGGAGCGTGTTCTTTCCAAACCCAAACAGTCTGAATGTAAGTTTGGGCTGCTTCCGGAATGTGATCATGCTTTCTGTTTATCATGTATCCGCAACTGGCGTAATAGTGCCTCAGCCTCTGGAATGGACATCAATAATAATGCTAATACAGTGAGAACCTGCCCTGTTTGCCGCAAACTATCTTATTTTGTCATTCCAAGTGCTATTTGGTTCTCTACAAAGGAAGAGAAACAGGAAATTATTGACAACTACAAGGGAAAGTGCAAATCGGTTGATTGCAAGCATTTTAACTTTGGAAATGGGAACTGTCCATTTGGGGCTAGATGTTTCTACAAGCATACAGTGAAGCAAGGCTCATACACAGACATACATAGGAAGCCACCACCTCGACATAGGCCAAACAATTATGATATGTATGATGTGTTGGATATGCTAAATGAAGTTGATTTACAACCTGAAGAATATTATTCCATCATGAGGGACTCGGAGTTCTTTGATGAAATGGATGCTTGTGAAATGATGGCTTTATCACAAAGTATGGGTCTTTACAATTCTGATGAGGAAGATGAGTATAATTTTTTTCAGATGGCCGCTTTCTCAGAGGCAATGGCTTCTGGTGTGGATGATTTTGGACATGAAGATTTTGAAAATGAAGAATTCAATCCTATGGAGGCAGCCTTGTTTTCAATGATGATGCATTCTAATATGGAAGAAGAAGAAGAAGATGATGATGATGATGATGACGACGAGAGCGATGAACACTTCTTCTAG 1359 0.4062 MFNRGICKFYARGRCLKGEQCDYSHQRNDTPVDICAYYQKGSCTYGSQCRFKHVKASQASSSADRRQSLVSDSAAAHTTRGTSSSVRKAANLSSYDKRAQSLQHKHQESLGHGDVGESSTRTATATPSVHIFCPFAAADCPSRDKCPLIHGNQCSYCEKYCLHPTDREGKKNHLRTCEKKEKYLQDLSKEVECNVCLERVLSKPKQSECKFGLLPECDHAFCLSCIRNWRNSASASGMDINNNANTVRTCPVCRKLSYFVIPSAIWFSTKEEKQEIIDNYKGKCKSVDCKHFNFGNGNCPFGARCFYKHTVKQGSYTDIHRKPPPRHRPNNYDMYDVLDMLNEVDLQPEEYYSIMRDSEFFDEMDACEMMALSQSMGLYNSDEEDEYNFFQMAAFSEAMASGVDDFGHEDFENEEFNPMEAALFSMMMHSNMEEEEEDDDDDDDDESDEHFF* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4077 452 SUPERFAMILY RING/U-box 186 260 - -
Lja3g4077 452 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Lja3g4077 452 ProSiteProfiles Zinc finger C3H1-type profile. 283 312 IPR000571 GO:0046872
Lja3g4077 452 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 447 - -
Lja3g4077 452 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Lja3g4077 452 MobiDBLite consensus disorder prediction 62 121 - -
Lja3g4077 452 Pfam Zinc finger, C3HC4 type (RING finger) 193 253 IPR018957 GO:0046872
Lja3g4077 452 PANTHER MAKORIN-RELATED 1 447 IPR045072 -
Lja3g4077 452 SMART ring_2 193 253 IPR001841 -
Lja3g4077 452 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Lja3g4077 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 287 IPR013083 -
Lja3g4077 452 MobiDBLite consensus disorder prediction 432 452 - -
Lja3g4077 452 Gene3D - 1 31 - -
Lja3g4077 452 SMART c3hfinal6 127 152 IPR000571 GO:0046872
Lja3g4077 452 SMART c3hfinal6 283 311 IPR000571 GO:0046872
Lja3g4077 452 SMART c3hfinal6 3 27 IPR000571 GO:0046872
Lja3g4077 452 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Lja3g4077 452 Gene3D - 32 87 - -
Lja3g4077 452 SUPERFAMILY CCCH zinc finger 30 53 IPR036855 GO:0046872
Lja3g4077 452 MobiDBLite consensus disorder prediction 431 452 - -
Lja3g4077 452 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Lja3g4077 452 CDD RING-HC_MKRN 193 254 - -
Lja3g4077 452 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 54 IPR000571 GO:0046872
Lja3g4077 452 MobiDBLite consensus disorder prediction 62 98 - -
Lja3g4077 452 Pfam RNA-binding, Nab2-type zinc finger 6 25 - -
Lja3g4077 452 Pfam RNA-binding, Nab2-type zinc finger 288 309 - -
Lja3g4077 452 ProSiteProfiles Zinc finger RING-type profile. 193 254 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4077 Lja-Chr3 80160212 80163837 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g4077 zf-C3HC4 1.2e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4077 K15687 - gmx:100788886 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4077 3 80160212 80163837 Lja3g4077 3 80160212 80163837 ECH