Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4076 ATGGAGGACTTGAACCAAATTGTTATGATGTCTCATGCCGCGAACTCCAGCAAGAACGAACTCGAACCAAACAAGGAGGAAGTGACGACACACACCGCCACTGGTGACATCGACATCGCACCACATGGTGCCAAAGTCGAGGTTGCACTGAAACTCGTGACTGGAGAAGCGTCTGAGGCGACAGGTTCTGGACATGTGGTGAAAAGGGGGAGGGGGAGGCCTCGAAAGTACAAAGTTAACGAGAGCCAACTGACTGTAGTGACGGCGCAGCCACCGGTATTCGCCATTCAACCTTATGGCGGAGGTGAAAATGTTAAGCGAAGCAGGGGACGCCCTCGGGGTTCTACGAAGCCACAAATTCCGACTTCCATTATGTTAGCTGGTCGAGGTTTCACATCTCATGTGGTGGATGTGAACACTGGGGAGGATGTGATGAGCAAGATAACACCATTTTATCAGGCAGGTCCTCTGTCAGTTAGTCTACTTTTTGCTCATGGTCATGTTTCAAGTGTTGCCTTTCTCCAACCTGATTCTAATAACCTATTGAGATATGAGGGCTACTTTCAAATTATATCATTAAATGGATCATGCACCTATTCTACTGAAGTTGGTGGTCCTCTTACAAAAACCTTCAAGTTCGCGATTTCATTGCTTAAACCCGATGGAGAGATGTTTGGAGGGAACATTACAAGCTCCTTGATAGCCGCTGGCCCTGTTCGCCTTATATTGGCAACTTTCAAGCAAAACATAAGCAATCATATGAAGAGAAGGCAGTCATGTGGATCATCTACTGCTTCAAACATCCCAGGTAACCCAGATTCTGCAAGAGGAGATCTGCATAAAGTTCCTAGGATGACAAAAGGGGAGATCATCTGTCCTACACCAATATCAGCAGTGTTGCCAACATCATCAACTGATGGCATAACTGAGACTCCACCTCTTTCTTAG 948 0.4662 MEDLNQIVMMSHAANSSKNELEPNKEEVTTHTATGDIDIAPHGAKVEVALKLVTGEASEATGSGHVVKRGRGRPRKYKVNESQLTVVTAQPPVFAIQPYGGGENVKRSRGRPRGSTKPQIPTSIMLAGRGFTSHVVDVNTGEDVMSKITPFYQAGPLSVSLLFAHGHVSSVAFLQPDSNNLLRYEGYFQIISLNGSCTYSTEVGGPLTKTFKFAISLLKPDGEMFGGNITSSLIAAGPVRLILATFKQNISNHMKRRQSCGSSTASNIPGNPDSARGDLHKVPRMTKGEIICPTPISAVLPTSSTDGITETPPLS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4076 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 298 IPR039605 GO:0003680
Lja3g4076 315 MobiDBLite consensus disorder prediction 257 278 - -
Lja3g4076 315 MobiDBLite consensus disorder prediction 98 120 - -
Lja3g4076 315 ProSiteProfiles PPC domain profile profile. 128 267 IPR005175 -
Lja3g4076 315 Gene3D - 132 262 - -
Lja3g4076 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 249 - -
Lja3g4076 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 247 IPR005175 -
Lja3g4076 315 PANTHER DUF296 DOMAIN PROTEIN 15 298 - -
Lja3g4076 315 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Lja3g4076 315 SMART AT_hook_2 68 80 IPR017956 GO:0003677
Lja3g4076 315 MobiDBLite consensus disorder prediction 257 271 - -
Lja3g4076 315 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677
Lja3g4076 315 PRINTS AT-hook-like domain signature 68 78 IPR017956 GO:0003677
Lja3g4076 315 CDD DUF296 132 246 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4076 Lja-Chr3 80143868 80148638 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4076 50 246 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 38.119 3.00e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4076 - - mtr:MTR_4g055833 209.534