LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4074	ATGGACAAGGGGGTGCCACCTGCCATCTTCGCAAATGATGGTTCATTTATGGAAAGGTTCAAGCAACTTCAACAAGAGCAGGGAAAGGGGAAGAATGTCAACATCAAGGATTCTAAACCAATTAAAGTTATATCAGGGTCTTTGTCTTCTAATCCTTCCATTAGTAAAATGTCAGTGGACTTGAAGGCAAGTGATGCACATAAAACACCCCAAGCTGGTTCCAGTGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCTAAGCTGGTGCCACCACCTGTTAAGTTAAGTGCTGATGAGGATGAAGAAGAAACAGATGTTGCGGATGTTCCAAATGATGCACCACAGAAACGGCAAAAGTTAGGCCAGGAGAAGGGCACTGAGAAGTCATCAAGACAAGTTGATGTTGTACCTCCTTCTCCAAGTGATCCTACAGTGAAGAAAGTAGCTGACAAACTGGCAAGTTTTGTGGCTAGAAATGGAAGGCGATTTGAGGATGTCACACGTTCAAAAAATCCTGGGGATACACCTTTCAAGTTTTTATTTGATGAGAGATGTGCTGACTACAAGTATTATGAATATCAACTTGCTCAAGAGGAAAAGGCTCATATGCAGTCCCAGGAATCACAGGCGCCTCCTAATGGGTGTACAAGCACTTCGTCTTCCATACAGACAAATGGTCCTCAAAAATCATCTCAGCAGCGTACAGCCTACCAAATCCCTGCATCTGCTTTATATGAAAGTGGTGGCAATTCAAGGGCTTCTGTATCTTCAATTCAAACATTATCAGCAGGAAGCATTGAGGAACCCAGTGTTTCATCAAGTGCTGATTCCTTAGCACTGATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAAAAGTTTAAACAACCTAAGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGTAAGAAAGGCCATCACATGGATGATTTCATTCCACCGGAAGAACTTAATAAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAAAGCTGCCCTGGAGGCTGCAGAGAGGGCTAAAATCCAGGCTGATAACGTTGGTCATAAGCTCTTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCGGCTCTAGGAAGGGCATTTCGGATCCTATCATGGCAGGTAACATTAAGAAGAATAACTTGGGGGTTGGTGCTCACGAACCTGGGGAGGTGACTGCTGAGGATGACATATATGAGCAGTACAAGAAGCGGATGATGCTCGGCTACCGCCACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTATTGA	1314	0.4452	MDKGVPPAIFANDGSFMERFKQLQQEQGKGKNVNIKDSKPIKVISGSLSSNPSISKMSVDLKASDAHKTPQAGSSGKLAFSLKQKSKLVPPPVKLSADEDEEETDVADVPNDAPQKRQKLGQEKGTEKSSRQVDVVPPSPSDPTVKKVADKLASFVARNGRRFEDVTRSKNPGDTPFKFLFDERCADYKYYEYQLAQEEKAHMQSQESQAPPNGCTSTSSSIQTNGPQKSSQQRTAYQIPASALYESGGNSRASVSSIQTLSAGSIEEPSVSSSADSLALMEFYMKKAAQEEKFKQPKQSKDEMPPPASLQGKKGHHMDDFIPPEELNKFLASCNDAAAQKAALEAAERAKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNIKKNNLGVGAHEPGEVTAEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY*	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4074	437	SMART	G-patch_5	352	399	IPR000467	GO:0003676
	Lja3g4074	437	Pfam	Surp module	147	196	IPR000061	GO:0003723\|GO:0006396
	Lja3g4074	437	Pfam	G-patch domain	355	398	IPR000467	GO:0003676
	Lja3g4074	437	MobiDBLite	consensus disorder prediction	199	250	-	-
	Lja3g4074	437	SMART	surpneu2	146	200	IPR000061	GO:0003723\|GO:0006396
	Lja3g4074	437	MobiDBLite	consensus disorder prediction	291	315	-	-
	Lja3g4074	437	Gene3D	Surp module	97	206	IPR035967	GO:0003723\|GO:0006396
	Lja3g4074	437	ProSiteProfiles	G-patch domain profile.	354	401	IPR000467	GO:0003676
	Lja3g4074	437	MobiDBLite	consensus disorder prediction	43	148	-	-
	Lja3g4074	437	PANTHER	ARGININE/SERINE RICH SPLICING FACTOR SF4/14	4	437	IPR040169	-
	Lja3g4074	437	PANTHER	SURP AND G PATCH DOMAIN-CONTAINING 1	4	437	-	-
	Lja3g4074	437	SUPERFAMILY	Surp module (SWAP domain)	128	199	IPR035967	GO:0003723\|GO:0006396
	Lja3g4074	437	MobiDBLite	consensus disorder prediction	43	58	-	-
	Lja3g4074	437	MobiDBLite	consensus disorder prediction	109	130	-	-
	Lja3g4074	437	ProSiteProfiles	SURP motif repeat profile.	148	191	IPR000061	GO:0003723\|GO:0006396

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g4074	Lja-Chr3	80115624	80122954	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g4074	344	437	C2H2 Transcription Factor Family	AT5G26610	37.168	4.72e-10	58.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g4074	3	80115624	80122954	Lja3g4074	3	80115624	80122954	ECH