Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4073 ATGACTAGGGATGTGATGAGCAAGATAGCACCATTTTATCAGGCAGGTCCTCTGTCAGTTAGTCTACTTTTTGCTCATGGTCATGTTTCAAGTGTTGCCTTTCTCCAACCTGATTCTAATAACCTGTTGAGATATGAGGGCCACTTTCAAATTATATCATTAACTGGATCATGCGTCTATTCTACTGAAGTTGGTGGTCCTCTTACAAAAACCTTCAAGTTCATGATTTCATTGCGTAAACCCGATGGAGAGATTTTTGGAGGGAACATTACAAGCTCCTTGATAGCGGCTGGCCTTGTTCGCCTTATCTTGGGCACTTTCAAGCAAAAAATAAGCAATCGTATCAAGAGAAGGCAGTCATCTGGATCATCTACTGCTTCAAACATCCCAGATTCTGCAAGAGGGGATCTGCATAAAGTTCCTAGGATGACAAAAGGGGAGATCATTTGTCCTACACCAATATCAGTAGTGTGGCAAAAAACATCAACCGATGGCATAACTGATACTCTACCTCTTTCTTAG 522 0.4157 MTRDVMSKIAPFYQAGPLSVSLLFAHGHVSSVAFLQPDSNNLLRYEGHFQIISLTGSCVYSTEVGGPLTKTFKFMISLRKPDGEIFGGNITSSLIAAGLVRLILGTFKQKISNRIKRRQSSGSSTASNIPDSARGDLHKVPRMTKGEIICPTPISVVWQKTSTDGITDTLPLS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4073 173 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 4 165 IPR039605 GO:0003680
Lja3g4073 173 PANTHER DUF296 DOMAIN PROTEIN 4 165 - -
Lja3g4073 173 MobiDBLite consensus disorder prediction 116 131 - -
Lja3g4073 173 CDD DUF296 4 107 IPR005175 -
Lja3g4073 173 ProSiteProfiles PPC domain profile profile. 1 128 IPR005175 -
Lja3g4073 173 MobiDBLite consensus disorder prediction 115 137 - -
Lja3g4073 173 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 108 IPR005175 -
Lja3g4073 173 Gene3D - 2 125 - -
Lja3g4073 173 SUPERFAMILY AF0104/ALDC/Ptd012-like 3 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4073 Lja-Chr3 80110748 80113149 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4073 3 107 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 42.453 3.71e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4073 - - mtr:MTR_4g055803 130.568