Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4072 ATGGATTCAAGTATTGGGCATCCACAACAACACAATTCTGGTCTATTGAGGTACCGTTCTGCTCCAAGCTCATTTTTAGCAAGCCTTATTGGCAACAACAACAATTTTGGCTGTGTGAATGAGGAAGCTTTCACAAGTGAGGATCATCATCAGGGTTATCATCTTCCATCCTCAAGTTCAGAAATGGAGACCATATTGTCCAAATTGGTTTCATCCAACCACAGATGGAGCAATTCAGAACCTATGCAAGAGTTTGGGGACAAGCCTGTGAAGCAGGAAATTAGGGAGTCGGCTCAAGAGAATGATTACTCTTATGGAGGATCTCAATTACTTTACAATTCAGAGCAAATTCAAGGGTTTGAAAATGGTTCTTCCAATGGGTTTTATAGCTCTTTGGGTTTAGTGAACTCCATGGTTTCAGAGAAATCAACTCAATCTAAAATGGGTGTCAGCAATTGCTCCAATCTCATTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCAATGCAAATGGTTTTGCAGCAACTAGTGGGTTGAATGGTACTGAAAATTTCTCATCTAGGCTACCATCCTCTTGCTTGACAAGGATGCCACAAATAGCTGAAAACAGAAATGAAAGCTTAGAAATAAATTGTGACCAAAGTAACCTGGAAAATTACAATAGCAGCTCTAAATCTTATATGCCCAGCTTCACCAGTGAAATCTGGGACAATTCTGCATTCCATTCCCAGAAAACAGAATGTGAGGATGAAATCGTATTTTCTACTTCAAATGGTTTAGAATCTCAGGAAGAAGATTTTTGCTATCAAAATCTTGGTTTGACTCACCATTTGAGTGTTCTTAGTCCTTCTGCTAAGATAGCATCCATAAAGAAGTTTCTCCAAATTCAAGGATCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTAAGAAGAACACGGATTAGTGAAAAAATCAAGAAACTGGAAGGCCTTTTTCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTCGGCAGTTGAGTACATTAAAGACCTGCAAGAACAAGTTAAGACACTCACAGATTGTAGAGAAAAGTGCAAATGTACAAGGAATGAGAAGCAATACTCTAGATGTTGTACATAA 1167 0.3933 MDSSIGHPQQHNSGLLRYRSAPSSFLASLIGNNNNFGCVNEEAFTSEDHHQGYHLPSSSSEMETILSKLVSSNHRWSNSEPMQEFGDKPVKQEIRESAQENDYSYGGSQLLYNSEQIQGFENGSSNGFYSSLGLVNSMVSEKSTQSKMGVSNCSNLIRQKSSPAGFFSNANGFAATSGLNGTENFSSRLPSSCLTRMPQIAENRNESLEINCDQSNLENYNSSSKSYMPSFTSEIWDNSAFHSQKTECEDEIVFSTSNGLESQEEDFCYQNLGLTHHLSVLSPSAKIASIKKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISEKIKKLEGLFPKSDKQTSTADMLDSAVEYIKDLQEQVKTLTDCREKCKCTRNEKQYSRCCT* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4072 388 CDD bHLH_AtbHLH_like 315 367 IPR045239 -
Lja3g4072 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 376 IPR036638 GO:0046983
Lja3g4072 388 Gene3D - 312 383 IPR036638 GO:0046983
Lja3g4072 388 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 380 - -
Lja3g4072 388 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 8 380 - -
Lja3g4072 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 360 IPR011598 GO:0046983
Lja3g4072 388 SMART finulus 316 366 IPR011598 GO:0046983
Lja3g4072 388 Pfam Helix-loop-helix DNA-binding domain 316 361 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4072 Lja-Chr3 80100042 80102845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4072 7 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 32.558 1.04e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g4072 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4072 - - gmx:100812802 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4072 3 80100042 80102845 Lja3g2706 3 39183883 39187509 ECH
Lja3g4072 3 80100042 80102845 Lja3g4072 3 80100042 80102845 ECH