Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4068 ATGGTTCGCTCCAATGGCGTCCGCCTCCTCCGATCTCTTCCCGCCGCTAAACTCCTCCGAGACGCCGCCGCCAAATCAGTTTATAATGGAGTCTTCCAAAGGGGCTATAGGGTATTCAATTCAGGACCCTGCAAACCTTCCGGCATTGTTGAAAGTTTTTCTTCAAAGGTCGGAAACAATGTTAATTTGAAGAGGAGGATGCTATTTGGAGCAGCTAATACATATTGGGCTGGATGTAGATCCATTCATAGCACAGCATCACTGGCAAGAGACTATTATGATGTTCTTGGTGTGAGTAAGAATGCAAGTTCTTCTGAACTAAAGGCAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGACCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATTGCATATGAGGTTTTGAAGGATGAGGTAAAGCGTCAAGAGTATGATCAGGATTTTGTCAAAGGCATGTTCAATCAGAAATTTGGTGGAGATGATGTCAAGACTTCCATCGAACTATCATTTATGGAAGCTGTCCAAGGATGTGCCAAAACTCTTACATATCAAACAGATGTGCGGTGTAACACTTGTGGTGGCAGTGGGGTACCTCCGGGTACAAGACCTGAAACTTGTAAGCGCTGTAAAGGGTCAGGAGTGATGTTTGTACAAGCCGGCATATTTAGGGTGGACCAAACATGTGGCACATGTAAGGGAACTGGCAAAATTGTAAAGAATTTCTGCAAGTCATGCAATGGTGCAAAGGTTATCAAAGGAACAAAGTCAGTCAAGTTGGATATTATGGCTGGTATGGATAGCAACGAGACCATAAAGGTTTGCAGAAGTGGTGGTGCAGATCCTGATGGAGGTCACCCTGGTGATCTGTATGTTACTATCATGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTGATATCCATGTAGATGCTCCTTTAAGTATCACTCAGGCAATGTTGGGCGGAACCATTCAGGTCCCAACTCTTACTGGAGATGTTGTTCTTAAGGTTCGTCCTGGCACTCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACAAAAAGATCTAACACATTTGGTGATCAATTCGTTCATTTTAACGTCCGCGTCCCAATAAACTTGACAGAGAGACAGCGTGAATTGATGGAAGAGTTTTCAAAGGAAGAGCATGGTGAAATTGATAATCAGAGAGCTGCTTCTGCTTCTGGGTGA 1248 0.4407 MVRSNGVRLLRSLPAAKLLRDAAAKSVYNGVFQRGYRVFNSGPCKPSGIVESFSSKVGNNVNLKRRMLFGAANTYWAGCRSIHSTASLARDYYDVLGVSKNASSSELKAAYYGLAKKLHPDTNKDDPEAEKKFQEVSIAYEVLKDEVKRQEYDQDFVKGMFNQKFGGDDVKTSIELSFMEAVQGCAKTLTYQTDVRCNTCGGSGVPPGTRPETCKRCKGSGVMFVQAGIFRVDQTCGTCKGTGKIVKNFCKSCNGAKVIKGTKSVKLDIMAGMDSNETIKVCRSGGADPDGGHPGDLYVTIMVREDPVFRREGSDIHVDAPLSITQAMLGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKRSNTFGDQFVHFNVRVPINLTERQRELMEEFSKEEHGEIDNQRAASASG* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4068 415 Hamap Chaperone protein DnaJ [dnaJ]. 88 408 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja3g4068 415 Gene3D - 197 257 - -
Lja3g4068 415 ProSiteProfiles dnaJ domain profile. 91 156 IPR001623 -
Lja3g4068 415 SUPERFAMILY HSP40/DnaJ peptide-binding domain 168 304 IPR008971 GO:0006457|GO:0051082
Lja3g4068 415 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 155 415 - -
Lja3g4068 415 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 32 154 - -
Lja3g4068 415 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 155 415 - -
Lja3g4068 415 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 32 154 - -
Lja3g4068 415 Pfam DnaJ C terminal domain 171 383 IPR002939 -
Lja3g4068 415 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 184 259 IPR036410 -
Lja3g4068 415 ProSitePatterns Nt-dnaJ domain signature. 133 152 IPR018253 -
Lja3g4068 415 CDD DnaJ_zf 197 257 IPR001305 GO:0031072|GO:0051082
Lja3g4068 415 Gene3D - 171 299 - -
Lja3g4068 415 SMART dnaj_3 90 148 IPR001623 -
Lja3g4068 415 Gene3D - 304 412 - -
Lja3g4068 415 Gene3D DnaJ domain 79 170 IPR036869 -
Lja3g4068 415 PRINTS DnaJ domain signature 148 167 IPR001623 -
Lja3g4068 415 PRINTS DnaJ domain signature 128 148 IPR001623 -
Lja3g4068 415 PRINTS DnaJ domain signature 111 126 IPR001623 -
Lja3g4068 415 PRINTS DnaJ domain signature 93 111 IPR001623 -
Lja3g4068 415 Pfam DnaJ domain 91 153 IPR001623 -
Lja3g4068 415 Pfam DnaJ central domain 197 257 IPR001305 GO:0031072|GO:0051082
Lja3g4068 415 CDD DnaJ_C 168 386 - -
Lja3g4068 415 SUPERFAMILY Chaperone J-domain 90 167 IPR036869 -
Lja3g4068 415 SUPERFAMILY HSP40/DnaJ peptide-binding domain 308 394 IPR008971 GO:0006457|GO:0051082
Lja3g4068 415 MobiDBLite consensus disorder prediction 396 415 - -
Lja3g4068 415 ProSiteProfiles Zinc finger CR-type profile. 184 262 IPR001305 GO:0031072|GO:0051082
Lja3g4068 415 CDD DnaJ 91 145 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4068 Lja-Chr3 80028631 80040508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4068 84 161 C2H2 Transcription Factor Family AT1G74250 38.554 7.69e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4068 3 80028631 80040508 Lja3g4068 3 80028631 80040508 ECH