Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4066 ATGGCGCCGAGAAAAACCCCAAGGGTGACAAGGAACCCTGATTTGATCAGGGGAATCGGCAAGTACTCAAGGTCCCAGATGTACCACAAGAAAGGCATCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTCCCCCATCACGATGCTACCCCCAAGCCCCAAACCCTAGCTTCGAAGCCCCCCAAGTTCTACCCCGCTGATGATGTCAAGAAGCCTCTCCTCAACAAGCATAAGCCCAAACCCACAAAACTCAGGGCTAGTATTTCGCCGGGGACAGTGCTGATTCTGCTTGCTGGGAGATTTAAGGGGAAGAGGGTTGTTTTCCTGAAGCAGCTTCCATCTGGGTTGCTTCTTGTCACAGGTCCATTTAAGATCAATGGAGTTCCTTTGAGAAGGGTGAATCAATCTTATGTCATTGGTACATCCACCAAAGTGGATATTTCCGGTGTTAATGTTGATAAGTTCAATGACGAGTACTTTGTTAAGGAAGCCCAGAAAAAGAAACAGAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGAGCTTCCACAAGAAAAGAGAGATGCCCAAAGTACTGTGGACTCTGCAATATTGAAGGCCATTGATAGTGTTCCGGACCTGAAGTCTTACCTGGGTGCTAGGTTTTCTTTAAAGTCAGGAATGAAGCCACATGAGCTAGTCTTCTAG 699 0.4778 MAPRKTPRVTRNPDLIRGIGKYSRSQMYHKKGIWAIKAKNGGVFPHHDATPKPQTLASKPPKFYPADDVKKPLLNKHKPKPTKLRASISPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFNDEYFVKEAQKKKQKGEGEFFEAEKEEKNELPQEKRDAQSTVDSAILKAIDSVPDLKSYLGARFSLKSGMKPHELVF* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4066 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lja3g4066 232 Pfam Ribosomal protein L6, N-terminal domain 5 57 IPR005568 GO:0003735|GO:0005840|GO:0006412
Lja3g4066 232 MobiDBLite consensus disorder prediction 171 194 - -
Lja3g4066 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lja3g4066 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 - -
Lja3g4066 232 Coils Coil 161 181 - -
Lja3g4066 232 MobiDBLite consensus disorder prediction 171 192 - -
Lja3g4066 232 CDD KOW_RPL6 80 232 IPR041997 -
Lja3g4066 232 SUPERFAMILY Translation proteins SH3-like domain 86 172 IPR008991 -
Lja3g4066 232 Gene3D - 86 170 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4066 Lja-Chr3 80018555 80020646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4066 2 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 77.922 6.69e-117 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4066 K02934 - gmx:100784101 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4066 3 80018555 80020646 Lja3g4066 3 80018555 80020646 ECH