Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4064 ATGGCTGCTTTGCACTCTTATCTGCTCACACCACCCAATCTTCTCTCCCTCACAACTCCATCTTCTTCCACAACCAGCAACCTGCAACCCCGTCATCTCAGGTTGGCGCCTTCTCTCGCACGCCCACTCCGTTTACGAAGACCCTTTGCGGTGGCGGAGCAAGCTGCGGCCACCCAATCTGAGGCTGACCGGAGACTCTACGTTGGCAACATTCCTCGCACTCTCACCAACGATGAGCTTGCAAACATTGTTCAAGAACATGCTGCTGTTGAGAAAGCAGAGGTCATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACTGTGAAAACTGTTGAGGATGCAAATGCAGCAATTGAGAAACTTAACGGCACACAAATTGGAGGACGTGAGATTAAAGTAAATGTAACTGAAAAACCTTTAACGACAGTAGATTTTCCTCTAGTCCAGGCTGAGGAATCCGAATATGTTGACAGTCCCTACAAGGTATATGTGGGAAATCTGGCTAAGACAGTTACAAGTGATATGCTCAAAAACTTTTTCTCTGAGAAGGGAAAAGTGCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAGTCCAGTGGCTTTGGTTTTGTTACTTTTTCATCAGATGAGGATGTAGAAGCTGCAATCTCATCCTTCAACAATGCTCCATTGGAAGGACAAAAAATTCGTGTGAATAAGGCGTAG 723 0.462 MAALHSYLLTPPNLLSLTTPSSSTTSNLQPRHLRLAPSLARPLRLRRPFAVAEQAAATQSEADRRLYVGNIPRTLTNDELANIVQEHAAVEKAEVMYDKYSGRSRRFAFVTVKTVEDANAAIEKLNGTQIGGREIKVNVTEKPLTTVDFPLVQAEESEYVDSPYKVYVGNLAKTVTSDMLKNFFSEKGKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAPLEGQKIRVNKA* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4064 240 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 33 240 - -
Lja3g4064 240 Gene3D - 152 240 IPR012677 -
Lja3g4064 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 240 IPR000504 GO:0003723
Lja3g4064 240 SUPERFAMILY RNA-binding domain, RBD 57 142 IPR035979 GO:0003676
Lja3g4064 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Lja3g4064 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 136 IPR000504 GO:0003723
Lja3g4064 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 236 IPR000504 GO:0003723
Lja3g4064 240 CDD RRM_HP0827_like 65 142 - -
Lja3g4064 240 Gene3D - 47 146 IPR012677 -
Lja3g4064 240 PANTHER OS02G0815200 PROTEIN 33 240 - -
Lja3g4064 240 SUPERFAMILY RNA-binding domain, RBD 157 240 IPR035979 GO:0003676
Lja3g4064 240 SMART rrm1_1 165 238 IPR000504 GO:0003723
Lja3g4064 240 SMART rrm1_1 65 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4064 Lja-Chr3 80001161 80004869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4064 66 240 Eukaryotic Initiation Factors Gene Family AT2G23350 32.584 6.85e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4064 K13126 - gmx:100783567 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4064 3 80001161 80004869 Lja3g4064 3 80001161 80004869 ECH